Amaranthus tricolor (tampala): 130815135
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Entry
130815135 CDS
T09367
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
KO
K10752
histone-binding protein RBBP4
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03082
ATP-dependent chromatin remodeling
atri03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130815135
03083 Polycomb repressive complex
130815135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
atri03036
]
130815135
Chromosome and associated proteins [BR:
atri03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
130815135
Histone modification proteins
HAT complexes
HATB complex
130815135
HDAC complexes
Sin3A-HDAC complex
130815135
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
130815135
PRC2.2
130815135
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
130815135
Heterochromatin formation proteins
Other heterochromatin formation proteins
130815135
Chromatin remodeling factors
NuRD complex
130815135
NuRF complex
130815135
NuRF complex (fruit fly)
130815135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
WD40_Prp19
Beta-prop_EML_2
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EML
WDR55
Beta-prop_DCAF12
EIF3I
Beta-prop_WDR75_1st
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
130815135
NCBI-ProteinID:
XP_057537479
LinkDB
All DBs
Position
6:complement(23136829..23162233)
Genome browser
AA seq
456 aa
AA seq
DB search
MRGKNQQSAIDEKYAQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLS
EQTDGSVPNTLVIANCEIVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELP
QHNHIVATHTDSPDVLVWDIETQPNRHAVLGATPSRPDLVLTGHKENAEFALAMCPKEPY
VLSGGKDKTVVLWSIQDHITTTASDSSANKSQGTGATIVKQNGENPSVGPRGIFQGHEAT
VEDVQFCPKSSQEFCSVGDDSCLILWDARTGSDPVTKVEKAHNADLHCVDWNPFDENYIL
TGSADSSVHMFDRRSLTSDGVGSPVHKFEGHKAAVLCVQWSPDNPTVFGSAAEDGVLNLW
DYDKVGKKKERGVRTPNAPPGLFFQHAGHRDKVVDFHWNTYDSWTLVSVSDDCDSSGGGG
TLQIWRMSDLIYRPEEEVLAELEEFKAHVATCGSKS
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgagaggaaagaatcaacagtctgctattgatgagaagtacgcacaatggaaatctctt
gttcctgttctttatgattggctcgctaatcacaacctcgtttggccttctctttcttgc
cggtggggtccacaacttgagcaagcgacatataagaatcgacaacgtctctatctctct
gaacagactgatggaagtgtgccaaatacactggtcatagcaaactgtgaaattgtgaag
ccaagagttgcagctgcagagcatatctcacagtttaatgaagaagcgcgttcaccattt
gtgaagaagtacaagactatcatacatcctggagaggtaaacagaatcagggaactacct
cagcataatcatattgttgctacacatacagatagtcctgatgtcctagtttgggacatt
gaaactcaacctaaccgtcatgcagtgctcggagcaactccatctcgtccagatttggta
ttgacggggcataaagaaaatgctgagtttgctcttgcaatgtgtcctaaggaaccttat
gtgctctctggagggaaagacaaaactgtggttttgtggagtattcaggatcacattaca
acaactgcctcagactcctccgctaacaagtctcaaggaacaggggcaacaatagtgaaa
caaaatggagaaaacccttctgtcggacctcgtggtatcttccaaggccatgaagctact
gtggaggatgtgcagttttgtccaaaaagttcacaggagttctgcagtgttggagatgat
tcttgcctcatactttgggatgctcgtactggatctgatcctgtcactaaggttgagaag
gctcataatgctgatctacattgtgttgactggaacccctttgatgaaaattacatcctt
acaggatctgctgatagctctgtccatatgtttgaccggcgtagccttacttctgacgga
gttggatctcctgttcacaaatttgagggccataaagctgctgttctttgtgttcagtgg
tctcctgacaatccaactgtctttggaagtgctgcagaggacggtgtgctcaacctttgg
gactatgataaggttggtaaaaagaaagaacgtggggtaaggacaccaaatgctcctcca
ggtctcttttttcagcatgctgggcacagggataaagtggttgatttccattggaatacc
tatgattcttggactcttgtgagtgtttctgatgactgtgattccagtggtggtggtgga
acactgcagatttggcgtatgagtgatctaatataccgaccagaagaagaggttttagca
gagcttgaagaattcaaggcacatgtagcaacttgtggttccaaatcctga
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