KEGG   Amaranthus tricolor (tampala): 130815151
Entry
130815151         CDS       T09367                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
atri  Amaranthus tricolor (tampala)
Pathway
atri03013  Nucleocytoplasmic transport
atri03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130815151
  09122 Translation
   03013 Nucleocytoplasmic transport
    130815151
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atri03019]
    130815151
   03041 Spliceosome [BR:atri03041]
    130815151
Messenger RNA biogenesis [BR:atri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     130815151
Spliceosome [BR:atri03041]
 Complex C
  Other components
   EJC/TREX
    130815151
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    130815151
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_Prp19 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_NOL10_N Beta-prop_WDR19_1st Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin Beta-prop_TEP1_C DSE1_N Beta-prop_WDR90_POC16_2nd Beta-prop_Vps41 WD40_MABP1-WDR62_2nd Beta-prop_WDR35_TULP_N eIF2A Beta-prop_EML Beta-prop_HPS5 Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_EIPR1 Beta-prop_DCAF12 WD40_RFWD3 Beta-prop_IFT140_1st Tricorn_2nd TRM82_WD WD40_MABP1-WDR62_1st PAC11 WDR90_beta-prop_4th B-prop_COPA_B_2nd CFAP251_N Beta-prop_WDR41 WD_LRWD1 DUF7099 Beta-prop_WDR11_1st Beta-prop_Nup120_160 PROPPIN
Other DBs
NCBI-GeneID: 130815151
NCBI-ProteinID: XP_057537501
LinkDB
Position
6
AA seq 319 aa
MAEQKSDEATIPFKNLHSREYQGHKKKVHSVAWNCIGTKLASGSVDQTARVWHIELLGHG
KVKDIELKGHTDSVDQLCWDPKHAELLATASGDKTVRLWDARSGKCSQQLELSGENINIT
YKPDGAHIAVGNRDDEITILDVRKFKPIHRRKFNYEVNEIAWDMSGEKFFLTTGNGTVEV
LAYPSLKALDTLMAHTAGCYCIAIDPLGRYFAVGSADSLVSLWDIEEMLCVRTFTKLEWP
VRTISFNHTGEYIASASEDLFIDISNLETGRSIHQIPCRAAMNSVEWNPKSNLLAYAGDD
KNKYQADEGVFRIFGFQSA
NT seq 960 nt   +upstreamnt  +downstreamnt
atggcggagcagaaatcagacgaagcaacaatcccttttaagaatctgcacagcagagaa
tatcaaggtcacaaaaagaaggtgcattcagtggcttggaattgcattggcacgaaactg
gcttcaggctctgttgatcaaacagctcgagtttggcacattgaacttcttggtcatgga
aaggtaaaagatattgaattgaaggggcacactgatagtgtggatcagctctgttgggac
ccgaaacatgcagaactacttgcaactgcatcgggggataaaacagttcgtttgtgggat
gctcgaagtggaaaatgctcacagcaactagaacttagtggtgaaaatatcaacattacc
tacaaacctgatggggcacatatagctgttggaaacagggatgacgaaataacaattctg
gatgttaggaagtttaaaccgattcacagacgcaagttcaattatgaggtaaatgaaatt
gcatgggacatgtcaggggagaagtttttcctaacaactgggaatggtactgttgaagtc
cttgcgtatccgtctttgaaggcactggacactcttatggctcatactgctggttgctat
tgcattgcaattgatccacttggaagatattttgctgtgggaagtgctgactcattagtc
agcctttgggatattgaagagatgttatgtgtacgaacatttacaaaactcgagtggcct
gttcgaacaataagtttcaatcacacaggagagtatatagcttcagccagtgaagattta
tttattgacatatcgaatcttgaaactggacgatctatccatcagattccatgccgggca
gcaatgaacagcgttgaatggaatccaaaatccaatttgcttgcatatgcaggagatgat
aaaaacaaatatcaagcagatgaaggtgttttccgcatatttggtttccagagtgcttag

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