Amaranthus tricolor (tampala): 130815374
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Entry
130815374 CDS
T09367
Name
(RefSeq) protein SLOW WALKER 1
KO
K14549
U3 small nucleolar RNA-associated protein 15
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
130815374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
atri03009
]
130815374
Ribosome biogenesis [BR:
atri03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
130815374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP15_C
WD40_Prp19
WD40
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
EIF3I
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_IFT122_1st
NBCH_WD40
Utp12
Beta-prop_WDR19_1st
WD40_RFWD3
WDR54
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Cupin_NOL9
Beta-prop_Nup120_160
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
130815374
NCBI-ProteinID:
XP_057537809
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Position
6:complement(22437185..22439142)
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AA seq
530 aa
AA seq
DB search
MADLQTFPTKPRLKPTSKQPNRSPESKYWKSFKTHQISGLVSSITSINFSPLSPHHFAAT
YGASLSFFNPHHPFTPTEPLSTIHSFKDTSFSASFRSDGKLLAAGCQSGTIHVFEAKTRN
NLRQLKGHTRPVRLVQYPRNDLLHLFSASDDSIVKYWDVATETSLNNLMGHKDYVRSGSP
SPVDDNLFVTGSYDHTVRVWDIRGFASGSNSSAMVINHGKPVEDVQYLPSGGLIATAGGN
VVKIWDVIGGGRCLYTLETHNKTVTSICVGKMGKDSGDESDQYRLLSVSLDGYFKVFDYS
KLKVTFSMRFPAPLLSVGFSPDCSTRVIGTSNGIIYMGKRKEKIDEKPSIDQGFLGFQYR
DEPKRVLKPSSFRYFHRGQSEKPKGGEYLILKPKKVKLAEHDKLLKKFRHKDAFVAVLQR
KNPENVVAVMEELIARKKLFKCVSNLDVGELEMLLGFLQKYTTLPRYAGLLMPFASKVIQ
MQAEELRSNDKLKSQIRNLKRSIQEELRIQQSLLEIQGIISPLMRIAGRR
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcttcaaaccttccctacaaaacctcgtctaaaacccacctccaaacaaccc
aatagatcccctgaatccaagtattggaaatctttcaaaacccaccaaatttctggcctt
gtttcttcaattacctccattaatttttcccctctttctccacaccatttcgcagctacc
tatggtgcttctctctcttttttcaacccacatcaccctttcacccctacggaacctctt
tccactatccactccttcaaagacacctcgttttctgcatcatttcgctccgatggcaaa
ctccttgctgcaggttgtcagtctggaaccatccacgtttttgaggctaaaacccgaaat
aatcttcgacaattgaaaggacatactcgtcctgtaaggttagttcaatacccacgaaat
gatcttttgcatttattttctgcttcggatgattctatagttaagtactgggatgttgct
actgaaacttctttgaataatttaatgggtcacaaagattatgttagaagtggatcccct
tctcctgttgatgataatttgtttgttactgggtcatatgatcacactgtaagggtttgg
gatattaggggtttcgcttcaggttcaaattcatcagccatggtgataaaccatggaaaa
cctgtggaagacgttcaatatttaccctctggtgggttgattgccactgctggagggaat
gtggtgaagatttgggatgtaattggaggtgggagatgtttgtatactttagaaactcat
aataagactgttacatcaatttgtgttggtaaaatggggaaagatagtggggatgaatct
gatcaataccgtcttttgagtgtttctttagatgggtatttcaaagtttttgattattca
aagctgaaagttacattttcaatgaggtttcctgcacctttgttgtcagtagggttttcc
ccagattgttcgacacgagtaattggaacctcaaatgggattatatacatggggaaaagg
aaggagaaaatcgacgaaaaacctagtattgatcaagggtttttaggatttcagtacagg
gatgaacctaagagggttttaaagccatcgtcttttaggtattttcatcgcgggcagagt
gaaaaaccgaaagggggtgagtatttgatattaaagccaaagaaagttaaattagctgag
catgataagctattaaagaagtttaggcacaaagatgcttttgtagctgttcttcagagg
aagaacccggaaaatgtggttgctgtaatggaagaattgatagcaaggaagaaattgttc
aaatgtgtgtcgaatttggatgtcggggagcttgagatgttgttggggttcttgcaaaag
tatactactcttcctaggtatgctggtttgttgatgccatttgctagtaaggttattcag
atgcaagctgaggaacttcgatctaatgataaacttaagtcccaaattaggaatttgaaa
cggtcgattcaggaagagttgaggatacaacaatcattgctggaaatacagggaataatt
tctcccttgatgagaattgcagggaggagatag
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