Amaranthus tricolor (tampala): 130815803
Help
Entry
130815803 CDS
T09367
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atri03041
]
130815803
Enzymes [BR:
atri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130815803
Spliceosome [BR:
atri03041
]
Complex C
Other components
Complex C specific factors
130815803
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
AAA_22
DEAD
HA2_N
AAA_19
AAA_30
AAA_7
T2SSE
AAA_11
RVP_2
Motif
Other DBs
NCBI-GeneID:
130815803
NCBI-ProteinID:
XP_057538263
LinkDB
All DBs
Position
6:complement(32134315..32165658)
Genome browser
AA seq
704 aa
AA seq
DB search
MAKFWKPGTEKPRLVEDEDGGVVFFYSSSSSSSSGFGYSNNIESQRRRLPVYKLKDAILF
LVENHATTVVVGETGSGKTTQIPQYLNEAGWADGGHVIACTQPRRLAVQSVALRVAEEMG
VRLGEEVGYVIRFEDVTTLGVTRIKFLTDGVLLREMMDDPLLSKYSVIMIDEAHERSIST
DIVLGLLKKIQRRRPELRLVISSATIEAKSIASFFRGSKKHRGTGDKLEPNTEPAIISVE
GRGFNVEINYVQEPVSDYLRAAVSTVIMIHKQKTVGDILVFLTGQDDIEAAVQLLNEEAQ
SFDKSTGELLVLRLYSGLPRTEQDFVLSPTPRGKRKAIISTNIAETSLTLEGIVYVVDSG
FSKQRFYDPMSDIENLVVAPISRASARQRAGRAGRVRPGKCYRLYTEEYYVNKMSAEGIP
EMQRSTLVSCVIQLKALGIDNILGFDWLASPSPEAMIRALEVLYSLNVLDDDAKLTSPTG
FQVAEIPLDPMLSKAILASNELGCSEEMLTIAAVLSVQSIWISVRGAQKQLDEAKLRFAA
AEGDHVTFLNVYKGFLQSGKSSKWCQKHFVNYHAMKKVLEAREQLNRTAQRLGMMLKSCD
RDIQAVRKAITAGFFANACHLEAYSHEGKYKTVRTSQDVYIHPSSVLFRVNPKWVVYHSL
VSTDRRYMRNVVKIDPSWLVEVAPHFFQFLETSKLSNSTSDFAV
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagttctggaagcccggaaccgagaaacctcgactggtggaagacgaagatggt
ggcgttgtcttcttctattcgtcctcatcatcttcgtcttctggtttcggatactctaat
aacatcgaaagtcagcgtcggagactgccagtgtataagctcaaagacgctattctcttt
ctcgttgaaaatcacgctactaccgttgttgttggcgaaactggtagtggaaaaaccact
caaatccctcagtatttaaatgaagcagggtgggctgatggtggtcatgttatcgcttgt
acgcagcctcggcgtcttgctgtccagtcggttgctttaagggttgctgaagaaatgggt
gtcagacttggtgaggaggttggatatgtaatcagatttgaagatgtgacgaccttgggt
gttactagaatcaagttccttacagatggagtgttgctgagggaaatgatggatgatcct
cttctgtccaagtacagtgtcatcatgattgatgaggcacatgaaagatctatttctact
gatattgtacttggtcttttaaagaagattcaaaggcgtagacctgaactgcgtttagtt
atctcatctgcaactattgaagcgaaatcgatagcatcattcttcagaggaagtaaaaag
catcgaggaaccggagacaaactggagccaaatacagagcccgctattatctcagttgag
ggaagaggctttaatgtggaaatcaattatgttcaggaaccagtctctgactatcttcga
gcagctgtttcaactgtgattatgattcacaaacagaaaacagtgggcgatatacttgta
tttcttactggccaagatgatattgaggctgctgttcagctgttgaatgaagaagctcag
agttttgacaaaagcactggagaattgcttgttctgcgtttgtactctgggcttccacgt
acagagcaggattttgtcttgtcccctactcctagggggaaaaggaaggctataatttca
acaaatattgcagagacatcattgaccttggagggaatagtctatgttgtggatagtggt
ttctcaaagcaacgattttatgatccgatgtctgacattgagaatttggtggtggcgccc
atatccagggcttctgcaagacaaagggcgggtagggctggaagagtgagacctgggaag
tgttacaggttatacacggaggaatactacgtaaataaaatgtcagctgaggggattcca
gagatgcagagatcaactcttgtctcctgtgttatacagttaaaggctctaggaattgat
aacatcttgggatttgattggcttgcatcaccatcaccagaagctatgattagggctctt
gaagtattgtactcgctgaatgtgctcgatgatgacgccaaactcacttcgcctactgga
ttccaagttgcggagattccactggatcctatgctctcaaaagctattcttgcatctaat
gaacttgggtgttccgaggagatgcttactatagcagctgttctttctgtacagtcaata
tggatctctgtcaggggtgctcaaaagcaactggatgaagccaagcttcgatttgctgct
gctgagggtgaccatgtaacattcctaaatgtgtacaaaggatttttgcaatctggtaaa
tcatcaaaatggtgtcaaaagcactttgtaaactatcatgctatgaaaaaagttttagag
gccagggaacaactcaacagaaccgctcaacggttaggtatgatgttgaaatcttgtgat
agagatatacaggctgtaagaaaggcaataactgctggattttttgccaacgcttgtcat
ttagaagcatacagtcatgaaggaaaatacaagactgtacgaacatctcaggatgtctat
atccacccttcatctgttttgttcagagttaacccgaagtgggttgtataccattctctt
gtctcaactgatcgccgatacatgcgcaatgttgtgaagatagatccttcatggttggtg
gaagttgcaccacatttttttcagttcctagaaactagtaaactttctaattcgacaagt
gattttgcagtctga
DBGET
integrated database retrieval system
