KEGG   Amaranthus tricolor (tampala): 130815982
Entry
130815982         CDS       T09367                                 
Name
(RefSeq) protein transport protein SEC13 homolog B-like
  KO
K14004  protein transport protein SEC13
Organism
atri  Amaranthus tricolor (tampala)
Pathway
atri03013  Nucleocytoplasmic transport
atri04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:atri00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    130815982
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    130815982
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atri03019]
    130815982
   04131 Membrane trafficking [BR:atri04131]
    130815982
Messenger RNA biogenesis [BR:atri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     130815982
Membrane trafficking [BR:atri04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    130815982
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    130815982
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    130815982
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_Vps41 Beta-prop_RIG_2nd WDR55 Beta-prop_WDR3_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_EIPR1 EIF3I WD40_Gbeta Beta-prop_WDR19_1st Beta-prop_TEP1_C Beta-prop_WDR36-Utp21_1st Beta-prop_IFT122_1st Beta-prop_HPS5 Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR41 Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 130815982
NCBI-ProteinID: XP_057538528
LinkDB
Position
6:complement(8491233..8493523)
AA seq 301 aa
MPAQKIETGHNDVVHDVQMDYYGKRLATASSDATIKIIGVSNSASQPLATLTGHQGPVWQ
VSWAHPKFGSILASCSYDGRVIIWKEGNQNEWALAHVFHEHKSSVNSISWAPHELGLCLA
CGSSDGSISIHTVRADGGWDTNRIDQAHPVGVTSVSWAPATAPGALVGSDLLEPVHKLAS
GGADNTVKVWKLSNGTWKMDCFPALQMHSDWVRDVAWAPNLGLPKSTIASASQDGTVVIW
TVGKKGEQWEGKVLKDFKTPVWRVSWSLTGNLLAVADGNNDVTLWKEAVNGEWQQVSTTE
Q
NT seq 906 nt   +upstreamnt  +downstreamnt
atgcctgcacagaagatagaaactgggcataatgatgtggttcatgatgttcaaatggat
tattatggcaaacgacttgccactgcatcttctgatgctacgattaaaataattggtgtg
agcaattcggcttcacaaccccttgctacattgaccggccaccaaggccccgtttggcag
gtttcgtgggcacacccgaaatttgggtcgatccttgcctcatgttcttatgatggtagg
gtgattatatggaaggagggtaatcagaatgagtgggcactagctcatgtgtttcatgag
cacaaatcttcggttaattccatctcttgggcaccacatgaactagggctttgtttagct
tgtggatcatccgatgggagtatctcgattcacactgttcgtgctgatggtggttgggat
accaataggattgatcaggcacatccggttggggtaacatcagtgtcatgggctccagca
actgcaccaggagcccttgtaggatcggatttgctagaacccgttcataaactggcttcg
gggggtgctgataacactgtgaaagtgtggaagctttcaaatgggacatggaagatggat
tgcttcccagctcttcaaatgcactcagattgggtcagggatgtagcttgggctcctaat
cttgggcttccaaagtcaacaatcgccagcgcttcacaggacggaactgtggttatatgg
actgtgggcaaaaagggtgaacaatgggagggaaaagttttgaaggacttcaaaactcca
gtttggagggtttcatggtctttgacagggaacttgttagccgtagctgatgggaacaat
gatgtcacattgtggaaagaagcagttaatggagagtggcagcaggtttctacaactgag
caatag

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