Amaranthus tricolor (tampala): 130816148
Help
Entry
130816148 CDS
T09367
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130816148
Transcription machinery [BR:
atri03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
130816148
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MID_MedPIWI
Med13_C
Med13_N
Motif
Other DBs
NCBI-GeneID:
130816148
NCBI-ProteinID:
XP_057538782
LinkDB
All DBs
Position
6:complement(22796016..22817780)
Genome browser
AA seq
1958 aa
AA seq
DB search
MWTNIFRIGGLHHVSWFQFLPIESDLTTLPDKSAKTEQRDGATLEVLHSHLQLQKDGFLS
TWTNCFVGPWDPSQGMHNPDEKIKLWLFLPGRHSCIAETAQAAVCRLRVVASGIWISPGD
SEEVANALSQALKNRLERTLMELSYLRFGDVFLRYRPFSQSEELFRKGQPTIEFVFAATE
DAIFVHAILSTKHVRTISGGDLEKVLKLSSSSLGQRPPVIVSPHGMCGKITGCCSSDLVK
QVFVGCGTSRTSTGLVGLPYPVARTSGCKLRGQNYYLEVTVGRNIPKSEKGELPNSNIDR
CNHPTSGSPSNVIGNQEVSTGNHHFCEKTFIYPPEAVLVPVLQGSYARSSLKRFWLPNWR
GLSSPTLTLFSCGGSETDNMVDSWSESDEISLQRGLNSSSNSNNSSISSLSGSSSDSDCR
AKATSGDLEADADSLIGRQSGLSSVGAMETTGVKQGAKRSRSGADDSYVQTGSMINASTQ
DYSNSGITGIGNDQIGSQWDWDDDDRSVGMDIQALLLEFGDFGDFFENDSLPFGEPPGTA
ESQALMISGQDCGDGGGSPSGALMDVPDQMMSSGFQMFESFQPSSMGMEECVSTIQEATK
STSSSGPVSCAPAVSTGEVDHVIKAEALLTFAPEYGAVEAPSSELSSTVFRSPYQPKPEK
AESIKSSGYNYVYGATPPLSPGSNGSDENVGTTADSKIHPGKHDIGSILQKFYTQIDRGQ
TPVDIKSVMSNNSVISSEGESLSLFSGFNSATSVKAIKNMVGEVANSAKHLLISQQTIPA
VELECLMFQAFMCRIRHTLLSLCSSASTTWNRSIDNMALGQFSGDPSVTLENLPIKSELK
KKESIPVRIAGNFDGGMLDSPYNAPIGVWRSVGTTKPTKAANSLTAEAFSSLSHKKYTEE
TMNAYQNRQPLQDFLDAMPLLVQQAASFVDIAFDGEFVDGPYSWLALQEQGRRTFSCGPQ
MVHAGCGGVLASCHSFDISGVALLDPVSADAQPSSVLSLLQSDVKTALKSAFSNSEGPLS
VMDWCKGRSQSVDVGTISEAISAESSLSEYRESSNASAISMGNPVSPSQPSAGIPSGLRD
GSKGDDTSQRRSSQELCMSDSELQPELRRRPTLFVIPHSSILVGYQDDWLKTSATSLQLW
EKAPLEPYAFRKHVSYYVICPNIDPLTMVAADFFQELGSVYETCKLGSHFPHALGNQMDI
DTGKSSTSGFVVLDVPQSMKVDSSNASVMGSISDYYHSISSGWDLGSYLRSLAKVLKGLQ
VGSGLAGNTKEGTNSPCTVIYVVCPFPDPAAVLRTIVESSVAVASVIYSSDNDKRAMLHS
QVAQALSHASGVDEASISNIPALSGFSVPRLVLQIIPIDAIFRVTAPSLNELVMLKEIAF
TVYNKARRISRGSSNDIVHSSHFSGRSSSMLANMANPIPSMWKDCVGSRISGPSLSREAD
LDPGLRAGAWDNTWQRAGGLGCDPNRSAESFFLEDAHYVFEPLFILAEPGSVELGVSPTL
IGNMGTDDSNGGFLQSSTLCGDTVPSSQLDASEGDCFGSGQQKSPPSLHCCYGWTEDWRW
LVCIWTDSRGELLDNHIFPFGGISSRQDTKGMQNLFVQVLQQGCQLLQACASPDSGVVRA
RDFVITRIGCFYELECQEWQKALYSIGGSEVKKWPLQLRRASPDGLPTNSNGASLQQQEM
DRSLPSSPNPLYSPPSKSSGFMKGGLGQNASRKQLIGGPAVVDSSRGSLQWVQSISFVSV
SIDHSLQPVSQADAYTGNNQGNTTVGSLNYLEGFTPVRSLGSTTASYILIPSPSMRFLTP
SPLQLPTCLTSESPPLAHLLHSKGYAIPLSTGFVVSRAVPSLKKDIKNHKEEWPSSLSVS
LVDFYGGCGFPNDKLGRSLSKQAARGIVSDARENEVEIHLILESVMAELHALSWMTVSPA
YLERRSALPFHCDMVLRLRRLLYFAEKDLCRLLPEKQV
NT seq
5877 nt
NT seq
+upstream
nt +downstream
nt
atgtggaccaacatcttcagaattggcggtcttcatcacgtatcgtggttccaatttctc
cctattgaatccgatttgacaactttacctgataaaagtgcaaagacagagcagagagat
ggtgctacacttgaagttctgcattcacatctacagctacaaaaggacgggtttctcagc
acttggacaaactgttttgtgggcccatgggatccttctcagggaatgcacaatcctgat
gagaaaattaagctttggctttttcttcctgggcgccattcatgcattgctgaaactgct
caagctgcagtctgtagattaagagttgttgcctctggaatctggatttctccgggtgat
tctgaagaggttgcaaatgctttgtcacaggcactaaaaaatcggttggaaagaacactt
atggagctctcatatctaagatttggtgatgtatttttgagataccggcccttttcacaa
agtgaagaactattcaggaaaggtcaaccaacaatcgaatttgtctttgctgctactgaa
gatgccatttttgtgcatgctatattatcaacaaagcatgtacgaaccatttctggtggt
gatttggagaaagtgttgaagctttcctcgagtagccttggccagagacctcctgtgata
gtttctcctcatggaatgtgtggcaaaattactgggtgctgttcaagtgatcttgtgaag
caggtgtttgttggctgtggcacatcaagaacgtcaactggattggtaggattgccgtat
cctgttgctcgcacatctggatgcaagttacggggacagaattattacttggaagttact
gttggtcgcaatatacctaaaagtgaaaaaggggaattgccaaattcaaatattgacaga
tgcaatcacccaacatccgggtctccttccaatgttatagggaaccaggaagtatccact
ggcaatcatcatttttgtgaaaagacattcatctatcctcctgaagcagttcttgtccca
gttttgcaaggctcatatgcaagatcgtctttaaaaagattttggttaccaaattggagg
ggattgtcgtcacccactttgactctttttagttgcggtggctctgagacagacaacatg
gttgattcatggtctgaatctgatgagatcagcttgcaacgtggtctaaacagtagcagc
aatagtaataatagtagcatcagcagcttaagtggtagctcaagtgatagtgactgtaga
gccaaggcaacatcgggtgaccttgaagctgatgctgactccttaattggcagacagtct
ggtctatcatctgttggtgccatggaaactactggtgttaagcagggtgcaaaacgttca
cgctcaggagcagacgattcatatgtacaaacaggtagtatgataaatgcttccacacaa
gattacagcaattcagggatcacaggaattggaaatgatcaaattggctctcagtgggac
tgggatgatgatgatagaagtgtaggcatggacatacaagctcttcttcttgagtttggt
gatttcggtgatttctttgaaaatgattcattgccgtttggagagcccccaggaaccgca
gagtctcaggcactcatgatttctggtcaagattgtggagatggaggtggaagtccctca
ggtgcccttatggatgttccggatcagatgatgtcttcaggttttcaaatgtttgaaagc
tttcaaccttcttcgatgggcatggaagagtgtgttagtactattcaagaagccacaaaa
agtacttcttcatctggtcctgtgagctgtgcaccagcagtttcaactggtgaagttgat
catgtaattaaagctgaagcattattgacttttgctcctgaatatggagcagttgaggcc
ccttcaagtgagctttcctcaactgtgtttagaagcccctaccagccaaaacctgagaaa
gctgagagtataaaatcaagtggatataattatgtttatggcgcaacaccacctttatca
cctggctccaatgggtctgatgaaaatgttggtacgacggctgattccaaaatacatcct
ggaaaacatgatattggttctattctccagaaattttacacccagattgatagaggtcaa
actccagtggatataaagtctgttatgagtaacaattcagtgatttcttctgagggggaa
tctttgtctttattttctggtttcaactctgctacttctgttaaagctattaaaaatatg
gttggtgaagtggctaatagtgctaaacacctactgatttctcaacaaacaatccctgct
gttgaacttgaatgcttaatgttccaggcgttcatgtgcaggatccgacataccttacta
tctctttgtagttctgcttctacaacctggaacagatccattgacaacatggcattggga
caattttctggtgatcctagtgtcacccttgaaaatctgcccattaaatctgaattgaaa
aagaaggaatcaataccagtcagaattgctggtaattttgatggagggatgcttgatagt
ccttataatgcacccattggagtttggcgctctgttggaacgactaaacctacaaaagct
gctaattcacttactgctgaggctttctcttccttatcacataagaagtataccgaggaa
accatgaatgcatatcagaataggcagccacttcaagattttcttgatgccatgccattg
cttgtccaacaagctgcctcttttgttgatattgcatttgatggtgaatttgttgatggt
ccatacagctggcttgctttacaagagcagggaaggcggacattctcgtgtgggccgcaa
atggttcatgctggttgtggtggtgttttggcatcttgccattcttttgatatttctggt
gtggctctgcttgatcctgtttcagctgatgctcagccatcatcagttctaagtttgctg
cagtctgatgtgaaaacagctttgaaatctgcatttagtaactcagagggtcctttatcg
gttatggattggtgcaaaggtcggtctcagtcagtagatgtaggaactatatccgaagcc
atatctgctgaatccagtttaagcgaatatagagaatcttcaaatgcgtcagcaatatct
atgggtaacccagtcagcccgtcacagccctctgctggtatcccttctggcttgagagat
ggaagtaaaggggatgacactagtcaaagaaggtcaagccaggagctctgcatgtcagat
tcagagctgcagcctgagttgcggaggaggcctaccctgtttgtcattcctcattcctct
atccttgttggataccaagatgattggctgaagacatcagcaacttctttgcaactatgg
gaaaaggctcctcttgagccatatgctttccggaaacacgtttcttattatgttatttgt
ccaaatattgatcccttgactatggtggctgctgatttttttcaagaactaggaagtgtt
tacgagacatgcaaactgggaagccattttccgcatgctcttggaaatcaaatggatata
gatacggggaagagttcaacttctggttttgttgttcttgatgtccctcaatcaatgaag
gttgatagtagtaatgcctctgttatgggatcaattagtgactattatcattctatatca
agtggttgggatcttggaagctatctcagatctcttgcaaaggttctcaagggcttacaa
gtcgggtctggtttggctggaaatacaaaagaaggaactaatagtccttgtactgtgatc
tatgttgtgtgcccatttcctgatccagctgctgttctgcgtactattgttgaatcttct
gtagctgttgcttcagtgatatactcatctgataatgacaagagagccatgttgcacagt
caggtggcacaagctttaagccatgcatcaggtgttgatgaagcatccatatcaaatatt
cctgcactctcagggtttagtgttcctagattagttctgcaaattattcccatagatgca
attttccgagttacagctccaagtcttaacgaacttgttatgcttaaagagatagctttt
actgtttataacaaggctaggcgtatctcgcgaggatcctctaatgatattgtacattca
tcacacttttctggtagatcttcatcaatgttggcgaacatggccaatccgattccgagt
atgtggaaagattgtgttggttctcgcatttcaggtccatcgctatcaagggaagctgat
cttgatcctgggttgagggctggagcctgggataacacatggcaaagggctggtggatta
ggttgtgaccccaaccgaagtgcagaatctttctttctagaggatgcccattatgtgttt
gaaccactttttattttggctgaaccgggctctgtggagctgggggtatcgcctacgctc
attggtaatatgggtacagatgatagcaatggaggatttttgcagagttcaacactatgt
ggagatacagtgcccagctcccagcttgatgcatctgaaggtgattgctttggatctggc
caacagaagtcacccccaagcctgcactgttgctatggttggacggaagattggcgttgg
ctggtgtgcatatggaccgattctagaggagaactgctggacaatcacatttttcctttt
ggtggaattagtagtagacaagataccaagggcatgcaaaacctttttgtccaagttctt
caacaaggttgccaactacttcaggcctgtgcttctccagattcaggtgtggtgagagca
agagattttgtgattacaaggattgggtgcttttatgagctagaatgccaagaatggcag
aaagcactctattcaatcggtgggtcagaagttaaaaaatggccattgcaattacggcga
gcaagtccagatggtctaccaaccaacagcaacggagcgtcccttcagcagcaggaaatg
gatagaagcttaccttcttcccctaatccactgtatagtccaccctcaaaatcttctggc
ttcatgaaaggaggactgggacaaaatgcaagtagaaagcagcttattggtgggccagcg
gttgttgattcctcaagaggatcattgcagtgggtacagagcattagctttgtctcagta
tccattgaccactctctacagcccgtctctcaagctgatgcctatactgggaacaatcaa
ggtaataccactgtgggttcattgaattacttggaaggatttacccctgttagatctctt
ggttctaccacagcctcttacattttgatcccatctcctagcatgcgcttcctcacgcca
tcccctcttcagcttccaacttgcttgacctcagaatcaccccctctggctcacctcctt
cacagtaaaggctatgcgattccactttctaccggttttgtagtatcaagagctgttccg
tcacttaagaaagacatcaagaaccataaagaagaatggccttcttctctttcagttagt
cttgttgatttttatggaggttgtggttttccaaatgataaattgggaagatcactttca
aaacaggcagccagaggcatagtttctgatgctagggagaatgaagtagagatccatttg
attctcgagtctgttatggctgagctccatgccctgtcgtggatgactgtgagccccgca
tatctcgagagacgttcggcacttccatttcactgtgacatggtattgaggttgagaagg
ctgttatattttgccgagaaggatctatgtcgtctgctacctgaaaaacaagtatag
DBGET
integrated database retrieval system
