Amaranthus tricolor (tampala): 130817931
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Entry
130817931 CDS
T09367
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC1A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
atri04131
]
130817931
04121 Ubiquitin system [BR:
atri04121
]
130817931
Enzymes [BR:
atri01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130817931
Membrane trafficking [BR:
atri04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
130817931
Ubiquitin system [BR:
atri04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130817931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-rbx1
zf-RING_UBOX
zf-C3HC4
zf-RING_11
zf-C3HC4_3
zf-RING_5
Rad50_zn_hook
zf-ANAPC11
zf-Nse
CxC4
Motif
Other DBs
NCBI-GeneID:
130817931
NCBI-ProteinID:
XP_057539889
LinkDB
All DBs
Position
7:19174358..19176419
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AA seq
323 aa
AA seq
DB search
MSSGGNTHWCYQCRQPVRPQTRGMVCPYCDGGFVQDLSELGGNPGGYNTSYGARDSSDQV
LGIMGALDSLMLSSTPEHRLGLIEALDAFMGQRRRYGMDSDRYPWLIFQGQMPARMPVHR
HGGFEMFFNGNPGIGFSRGNNGDLFVGPGLQELIEQLMVDRQGPPPAPRSAIDAMPTIKI
TRAHIQTDSHCPVCKDQFELGTEARQMPCHHIYHSDCIIPWLVQHNSCPVCRHELGSSPV
NCGQNSSSGSRRSSNSNSRERGSTDQNTSRRNPLSFLWPFRSSNNSSSSREYVATPASSR
SNPPPASHEDNHEMNYSGWPFDY
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtggtggaaatacacactggtgttatcaatgcaggcagccagttcgccctcaa
actcgagggatggtttgcccttattgtgatggagggtttgtgcaggacttgagtgaatta
ggtggtaatcctggtggatataatacctcttatggtgcaagagatagttcggatcaagta
ttaggaattatgggagcattagactctttgatgttaagcagtactcccgagcatcggtta
ggattaattgaagctttggatgcttttatggggcaaagaaggagatatggtatggattca
gatcgttacccttggttgatatttcaagggcaaatgcctgcaaggatgccagttcataga
catggtgggttcgagatgttcttcaatgggaacccaggaattggatttagtcggggaaac
aatggtgatttgtttgtgggtcctggacttcaggagttaatagagcagctaatggttgat
cggcaaggtccaccaccagctcctcgatcagcaatcgatgctatgccaacgatcaagatc
actcgggctcatattcagactgattcacattgccctgtttgtaaagatcaattcgagctg
ggcactgaagctaggcaaatgccctgccatcacatatatcattctgattgcataatccca
tggttagttcagcataactcttgccctgtctgtcgccatgagttaggttcaagtcccgta
aattgtgggcagaactcaagtagtgggagcagaagaagctctaatagcaactcccgggaa
agaggaagcaccgatcagaatacgagcaggaggaatccattatctttcctgtggcctttt
cgctcatcaaacaacagcagcagcagccgagagtatgtagcaacaccagcaagtagtcgt
agcaacccgccaccagcaagccatgaagacaatcacgaaatgaactacagtggttggcct
tttgattactag
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