Amaranthus tricolor (tampala): 130818095
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Entry
130818095 CDS
T09367
Name
(RefSeq) pre-mRNA-splicing factor 38
KO
K12849
pre-mRNA-splicing factor 38A
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130818095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atri03041
]
130818095
Spliceosome [BR:
atri03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
130818095
Complex C
U4/U6.U5 tri-SnRNP related factors
130818095
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Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
HIND
Motif
Other DBs
NCBI-GeneID:
130818095
NCBI-ProteinID:
XP_057540112
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Position
7:complement(24389826..24394212)
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AA seq
389 aa
AA seq
DB search
MANRTDPTAKNIRGTNPQNLIEKIVRSKIYQNTYWKEQCFGLTAETLVDKAMELDHVGGT
FGGNRKPTPFLCLVMKMLQIQPEKDIVVEFIKNEDYKYVRVLGAFYLRLTGTDSDIYLYL
EPLYNDYRKLRRKKQDGQFLLTHVDEFIDELLTKDYSCDIALPRIKKRWNLENIGALEPR
RSALEDDFEEEEEKEEDEMDVDVDEHEKDYRGRSPVRDRDRRRDSHRNRDRDYDRDYDYD
RERGRGRDRDRDRERDRDRDRDRDRDRDRDHRDRDRDRDRYRIREEREYDRDREREGRER
DRRDRDRGRRRSHSRSRSRSRDRKDRDGDRKRYERSLSPRRHGDEDNGAREETKKKKKKE
KKDDGTDHPDPEIAAANKLRAELGLKPLK
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcgtacagacccaacagcaaagaacattagaggtacaaatccacagaattta
atcgaaaagatagttcgatccaagatctaccagaacacttactggaaagaacaatgcttt
ggtcttactgcggaaactctcgtcgacaaagctatggagctcgaccatgtcggcggcact
ttcggtggtaatcgtaaacctacccctttcttatgtcttgtcatgaagatgctccaaatt
caacctgagaaggatattgttgtagaattcataaaaaatgaagattataaatatgtgagg
gtacttggggccttctatttacgtcttactggaaccgattctgatatctacttgtaccta
gagcctctatacaatgattatcgaaagctgcggaggaagaagcaggatgggcagtttttg
ttgactcatgtggacgagttcattgatgaacttctcactaaggactattcatgtgacatt
gctttgcctcgcattaagaaaagatggaatcttgagaacattggtgctctggaacctcga
agaagtgccctagaagatgattttgaggaggaagaagaaaaagaagaggatgagatggat
gtagatgttgatgaacatgaaaaggattaccgcggcagaagtcctgtgagagatagggac
aggagacgtgatagtcacagaaacagggatagggactatgatcgtgattatgattatgat
agagaacgtggaagaggcagagacagagacagagacagagaaagagatagagacagggac
agggacagggaccgagatagagatagagaccacagggaccgagaccgagaccgcgatcgt
taccgcattagagaggaaagggagtatgaccgcgatagagagagagaagggagggaaaga
gataggcgtgacagggatcgtggtaggcggaggagccattccagaagccgaagtagaagc
agggatcgtaaggaccgtgatggtgaccgtaagaggtatgaaaggagtcttagccctaga
cggcatggagatgaggataatggtgctcgagaggagacaaagaagaagaagaagaaagag
aagaaggacgatggaacagaccatcctgatccagaaattgctgcagcaaacaaacttcgt
gctgaactcgggttaaaaccattgaaatag
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