KEGG   Amaranthus tricolor (tampala): 130818095
Entry
130818095         CDS       T09367                                 
Name
(RefSeq) pre-mRNA-splicing factor 38
  KO
K12849  pre-mRNA-splicing factor 38A
Organism
atri  Amaranthus tricolor (tampala)
Pathway
atri03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130818095
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:atri03041]
    130818095
Spliceosome [BR:atri03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    130818095
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    130818095
SSDB
Motif
Pfam: PRP38 PRP38_assoc HIND
Other DBs
NCBI-GeneID: 130818095
NCBI-ProteinID: XP_057540112
LinkDB
Position
7:complement(24389826..24394212)
AA seq 389 aa
MANRTDPTAKNIRGTNPQNLIEKIVRSKIYQNTYWKEQCFGLTAETLVDKAMELDHVGGT
FGGNRKPTPFLCLVMKMLQIQPEKDIVVEFIKNEDYKYVRVLGAFYLRLTGTDSDIYLYL
EPLYNDYRKLRRKKQDGQFLLTHVDEFIDELLTKDYSCDIALPRIKKRWNLENIGALEPR
RSALEDDFEEEEEKEEDEMDVDVDEHEKDYRGRSPVRDRDRRRDSHRNRDRDYDRDYDYD
RERGRGRDRDRDRERDRDRDRDRDRDRDRDHRDRDRDRDRYRIREEREYDRDREREGRER
DRRDRDRGRRRSHSRSRSRSRDRKDRDGDRKRYERSLSPRRHGDEDNGAREETKKKKKKE
KKDDGTDHPDPEIAAANKLRAELGLKPLK
NT seq 1170 nt   +upstreamnt  +downstreamnt
atggcgaatcgtacagacccaacagcaaagaacattagaggtacaaatccacagaattta
atcgaaaagatagttcgatccaagatctaccagaacacttactggaaagaacaatgcttt
ggtcttactgcggaaactctcgtcgacaaagctatggagctcgaccatgtcggcggcact
ttcggtggtaatcgtaaacctacccctttcttatgtcttgtcatgaagatgctccaaatt
caacctgagaaggatattgttgtagaattcataaaaaatgaagattataaatatgtgagg
gtacttggggccttctatttacgtcttactggaaccgattctgatatctacttgtaccta
gagcctctatacaatgattatcgaaagctgcggaggaagaagcaggatgggcagtttttg
ttgactcatgtggacgagttcattgatgaacttctcactaaggactattcatgtgacatt
gctttgcctcgcattaagaaaagatggaatcttgagaacattggtgctctggaacctcga
agaagtgccctagaagatgattttgaggaggaagaagaaaaagaagaggatgagatggat
gtagatgttgatgaacatgaaaaggattaccgcggcagaagtcctgtgagagatagggac
aggagacgtgatagtcacagaaacagggatagggactatgatcgtgattatgattatgat
agagaacgtggaagaggcagagacagagacagagacagagaaagagatagagacagggac
agggacagggaccgagatagagatagagaccacagggaccgagaccgagaccgcgatcgt
taccgcattagagaggaaagggagtatgaccgcgatagagagagagaagggagggaaaga
gataggcgtgacagggatcgtggtaggcggaggagccattccagaagccgaagtagaagc
agggatcgtaaggaccgtgatggtgaccgtaagaggtatgaaaggagtcttagccctaga
cggcatggagatgaggataatggtgctcgagaggagacaaagaagaagaagaagaaagag
aagaaggacgatggaacagaccatcctgatccagaaattgctgcagcaaacaaacttcgt
gctgaactcgggttaaaaccattgaaatag

DBGET integrated database retrieval system