Amaranthus tricolor (tampala): 130818226
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Entry
130818226 CDS
T09367
Name
(RefSeq) probable pectate lyase 1 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri00040
Pentose and glucuronate interconversions
atri01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
130818226
Enzymes [BR:
atri01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
130818226
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
GlcNAc-1_reg
Motif
Other DBs
NCBI-GeneID:
130818226
NCBI-ProteinID:
XP_057540303
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Position
1:39633373..39639445
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AA seq
439 aa
AA seq
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MAISPKTCLASLLLLLFLTLVVAVRTVPRSEKTEELQSFKNITMAEKMEEVEIFNEHAVA
NPEEVVAMVHMSIQNSTQRRNLGYFSCGTGNPIDDCWRCDPNWHKNRKRLADCGIGFGRN
AIGGKNGRFYVVTDSRDDDPVNPRPGTLRHAVIQEEPLWIIFQRDMVIELKEELIMNSFK
TIDGRGANVHIANRACITIQYVTNIIIHGIHVHDCKPTGNAMVRSSTTHFGWRTMADGDG
ISIFGASHIWIDHNSLSHCADGLVDAVMGSTAITISNNHFAHHNEVMLLGHSDSYVRDKT
MQVTIAFNHFGTGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRYAAPA
NPFAKEVTKRVETAENKWKGWNWRSEGDLLLNGAYFTPSGTGASASYARASSLGAKSSSM
VGAITANAGPLSCRRGRQC
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcgatttctcctaaaacatgtcttgcttctcttcttctccttcttttccttactctc
gtcgttgctgttcgtactgttcccaggtcggagaaaacagaggaattacagagcttcaag
aacataacaatggcggaaaagatggaggaggttgagatttttaatgaacatgcagtagca
aatccagaagaggttgttgcaatggttcacatgagtatccagaacagcactcagaggagg
aatttgggttacttctcatgtggaacaggcaatcctattgatgactgctggcggtgtgac
cccaactggcacaaaaaccgtaaacgcctggctgactgtggtattggatttggaaggaat
gctattggtggcaaaaatggtcgcttctatgtcgttacagactctcgtgatgatgaccca
gttaaccccaggccagggacccttcgtcatgcagtcatccaagaagaacctctctggatt
attttccaacgcgacatggtgattgaattgaaggaagagcttataatgaacagcttcaag
acaattgatggacgtggagccaacgttcacattgctaacagagcttgcatcacaattcag
tacgtgactaacatcatcatccatggcattcatgtccatgattgcaaacccactggtaat
gctatggtgaggagttcaactactcattttggatggagaacaatggccgatggggatgga
atctcgatctttggtgcgagtcatatatggatcgatcacaattccctctcacactgtgct
gatggcttggttgatgctgtgatgggttcaactgctatcacaatttccaacaatcacttt
gctcaccataatgaggtgatgctactcgggcatagtgattcttatgtgagagacaagaca
atgcaagttacgattgcattcaaccactttggtacaggcctcatccaaagaatgccaagg
tgtcgccatggttatttccatgtggtgaacaatgactacacccactgggaaatgtatgca
atcggtggaagtgcagctcccacaattaacagtcagggcaaccgatatgcagcaccagcc
aacccttttgcaaaggaggtcacaaagagggtggagacagcggaaaacaagtggaagggt
tggaattggaggtccgagggagatcttctgttgaatggtgcatatttcaccccatccgga
actggagcctcagcaagctatgcaagagcctcgagcctaggtgctaaatcatcatcgatg
gttggagccatcacagctaatgcaggtcctctgtcctgtcgtaggggccgccaatgctag
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