Amaranthus tricolor (tampala): 130818269
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Entry
130818269 CDS
T09367
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130818269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130818269
Enzymes [BR:
atri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
130818269
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130818269
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130818269
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
PDE12-like_N
Motif
Other DBs
NCBI-GeneID:
130818269
NCBI-ProteinID:
XP_057540369
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Position
1:complement(40125308..40134216)
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AA seq
598 aa
AA seq
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MLSVVRVHIPSDIPIVGCELTPYVLVRKPDKTAFSDDVPETAPIDGYFLRYKWYRIQSDK
KVAVCSVHPTEQATLQCLGCIKARIPVSKSYHCSSKCFSDAWQHHRVLHDRAASAVNENG
AEEEELFGRLNSSGSGVMSTGLPPPASSPSLSNGSTSLYPAVVTQRSGGETWFEVGRAKT
YTPSADDIGHVLKFECVVVDAETKQTVGHPMTLTTSRVIPAPTPIPRRMISVSGADVIGH
LDSDGRNVSSGTFTVLSYNILADTYATSDTYSYCPSWALSWPYRRQNLLREIVGYRADIV
CLQEVQYNHFDEFFAPELDKHGYQALYKRKTSEVTTTLDGCATFFRRDRFSHVKKYEVEF
NKAAQSLTEAVVPSTQKKTALTRLVKDNVALIVVLEAKFSHQGVDPPGKRQLVCVANTHV
NVQQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPASAPHTLLAMGKVEPLHP
DLAVDPLGILRPHTKLAHQLPLVSAYSSFARGIGPALEQQRRRMDPSTNEPFFTNCTRDF
IGTHDYIFYTADFLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCKLRIRR
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcgtagttagggtgcatatcccgtccgacattcccattgtaggttgtgagctt
actccttacgttttagttcggaaaccggacaagactgcgtttagtgatgatgttcctgag
actgctcctattgatggctactttttgagatataagtggtatcgtatacagagtgacaaa
aaagttgctgtttgtagtgtgcatccaactgagcaagcgactctacagtgccttggttgt
ataaaggccaggatccctgtgtctaaaagttaccattgctcttcaaagtgtttttcagat
gcttggcagcatcaccgtgtgttgcatgatcgtgctgcaagtgctgtgaatgagaatgga
gccgaagaggaggaattgtttggacgccttaatagctcaggttctggagtcatgagcact
ggcttgcctccgcctgcatcgagtcccagtttgagtaatggatcgacatcgttgtatcct
gctgttgttacacaaagaagtggtggtgaaacatggtttgaagttggacgcgcaaagaca
tatacgccttctgctgatgatattggtcatgtcctgaaatttgaatgtgttgttgttgat
gctgagactaagcaaactgttggacatcccatgactttgactacatctcgtgtcatccct
gcgcctacaccaattccgcgtagaatgatttcagttagtggggcagatgtgattgggcat
ttggattctgatggtcgtaatgtgtcttctggaacatttacagtcctttcatacaacata
ttggctgatacttacgccacaagtgatacttatagttactgtccttcatgggccctttct
tggccgtatcgcagacaaaatctgttgcgtgaaattgtaggatatcgtgcagacattgtt
tgtcttcaagaggttcaatacaatcattttgatgaattttttgctcctgagcttgacaaa
catggctaccaagctctatataagaggaaaacttcagaggttacaacaacacttgatggg
tgtgcaacatttttccgaagagatagattttcacatgttaaaaaatacgaggttgagttt
aacaaggctgcacagtctctaacggaagctgtggttccctctacccagaagaaaactgct
ttaacgagacttgtcaaggataatgttgcactaatagttgtactggaagcaaaatttagt
catcagggtgttgaccctcctggaaaacgacaacttgtttgtgttgcaaatacacatgta
aatgtgcagcaagagctaaaggacgtgaaactctggcaggtccatactttgttgaaagga
ttggaaaaaatagctgctagtgctgatattccaatgttagtgtgtggagacttcaattcg
gttcctgcaagtgctcctcatactcttcttgcaatgggtaaagtggaaccattgcatcct
gatttagcagtggaccccttaggaatattgcggcctcatacaaaacttgcgcaccagctg
ccattggtcagtgcatattcatcctttgcaagagggattggtccagctttagagcagcaa
aggcgcagaatggatccttccacaaatgaaccctttttcacaaattgcacgagagatttt
attgggacccatgattacatattttacacagcggactttttgacggttgagtctttactt
gaactattggatgaggagagcttacggaaggatacagcccttccttccccagagtggtct
tccgatcatatagcactcttagccgaattccgttgcaaactaagaattcgacgttag
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