Amaranthus tricolor (tampala): 130818348
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Entry
130818348 CDS
T09367
Name
(RefSeq) transcription initiation factor TFIID subunit 6-like isoform X1
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130818348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130818348
03036 Chromosome and associated proteins [BR:
atri03036
]
130818348
Transcription machinery [BR:
atri03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
130818348
Coactivators
SAGA/TFTC/STAGA complex
130818348
Chromosome and associated proteins [BR:
atri03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
130818348
STAGA complex
130818348
TFTC complex
130818348
SAGA complex
130818348
SLIK complex
130818348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
TFIID-31kDa
Histone
CBFD_NFYB_HMF
TAF4
Motif
Other DBs
NCBI-GeneID:
130818348
NCBI-ProteinID:
XP_057540477
LinkDB
All DBs
Position
7:31352856..31362948
Genome browser
AA seq
545 aa
AA seq
DB search
MSIVQKETIEVIAQSIGITNLSPDVASTLAPDVEYRVREIMQEAIKCMRHSKRTILTADD
VDAALRFRNVEPIYGFASNDPLRFKRAAGHKDLFYVNDVDLDLKDVTEAPLPRAPLDTSI
SVHWLAIEGVQPAIPENPPPSMEALAPLSDGKKLEYKEEAIPIDIKFPVKHVLSKELQLY
FDKVLELTTRNSDTLLFKKALRSLATDPGLHPLVPYFACFIADELQVSRNLRKLSLLFGL
MHLVCSLLQNPHIHIEPYVHQLMPSVITCMVTKRLGNRYSDNHWELRNFAANLVARICQR
FGHVYHNLQPRITRTLLHVFLDPKKTWPQHYGAIQGLAALGPSVVRMLILPNLEPYMQLL
VPEMQLEGQKNEIKRQEAWQVYGALLFASGKCMHDLLKKFPSLPLPLAKPFLKSNMKIAA
MRPNKRKASMDNLLQQPPFKKLSSDGSMGVMPTNSMQGVGGGFTSGAVTGSDAGFSNINQ
QLQNENVSGSNVKREKIDVQAQKASALALAWKEETDGGRLSSSLFEHFGLSMFSFIPSPE
LSSFL
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgagtatagtgcaaaaagagacaattgaggtgattgctcaaagtattggaatcactaat
ttatccccagatgttgcttctactcttgctccagatgttgagtatcgtgtccgggaaatt
atgcaggaggccatcaaatgcatgcggcattccaagcgtacgattctgacagcagatgat
gttgatgctgctctcaggtttagaaatgttgagcccatctatggttttgcatccaatgat
cctttgcgttttaagagagcggctggacataaggatttgttctatgttaatgatgttgat
ctagatttaaaagatgttactgaagcacctttgcccagagctcccctggatacctctatt
tctgtgcattggctggctattgaaggtgtacagcctgccattcctgagaatcctccacct
tcaatggaagctcttgcaccattgtccgacggcaagaaattagagtacaaagaagaagca
attcctattgacattaagtttcctgtcaaacatgtcttgtctaaagagcttcagctttat
tttgacaaagttcttgagcttactacacggaattctgacaccctcctcttcaaaaaagct
ttgcgaagcttagctaccgatccaggacttcatcctcttgtaccttatttcgcttgcttc
attgctgatgagttacaggtttctcggaatttgcgtaaactaagtcttctctttgggcta
atgcatcttgtttgcagccttttacaaaatccacacatacatatagaaccttatgtacat
cagcttatgccatctgtcattacctgtatggtaacgaagaggctagggaacagatattct
gataatcattgggagctgagaaactttgctgcaaacctagttgccagaatatgccaaaga
tttgggcatgtttatcataacctccagcctcgaatcaccaggacactgctccatgttttt
ttggacccaaagaagacatggccccaacattatggtgctattcaagggcttgctgctctt
ggacctagtgtggttcgtatgctcatcctaccaaacctagagccatatatgcagctcttg
gtaccagaaatgcaactagaaggtcagaagaatgagatcaaaaggcaagaagcttggcag
gtttacggtgctttgttgtttgcttctggcaaatgcatgcatgatctgttaaagaaattt
cctagcttaccgcttcctttagcgaaacccttcttgaagtctaatatgaagattgctgca
atgcgaccaaacaaacgaaaagctagcatggacaaccttctacaacagccaccatttaag
aagttatctagtgatggttcgatgggtgtaatgccgacaaactccatgcaaggggttggc
ggaggatttacgagtggtgctgttactggatctgatgctggtttttcaaatattaaccaa
caattgcaaaatgaaaacgtctctggaagtaatgtaaaaagggagaaaatagacgttcaa
gctcaaaaggcttcggctcttgctctggcttggaaggaagagacggatggtggccgttta
tcgtcctcgctctttgaacattttggtcttagcatgttttccttcattccatctcctgaa
ctgtcctcttttttgtag
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