Amaranthus tricolor (tampala): 130818781
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Entry
130818781 CDS
T09367
Name
(RefSeq) RNA polymerase sigma factor sigA-like
KO
K03086
RNA polymerase primary sigma factor
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130818781
Transcription machinery [BR:
atri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
130818781
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r4_2
HTH_23
DUF4423
Motif
Other DBs
NCBI-GeneID:
130818781
NCBI-ProteinID:
XP_057540965
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All DBs
Position
7:complement(12805412..12812315)
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AA seq
485 aa
AA seq
DB search
MTAAAVVGLSAGKRILRSSFYYSDFAEKLTSIAEHRHIIPTKTLIVAKKIASHNHRGIDA
ASIIPPTSEQWIPISSPLEEKTLDPETPLEALLLLQKSMLEKQLELSFERTSFTDLPKEK
LHITSSGIPARVRRIKARKRTQGKMLSTEESEGKKSSLSTVSPELLQNRLIGYVRGLTNN
ELLTHAQVVNLSRKIKAGISLEEHKSRLKEKLGCEPSDVQLANSLRMDRSELTSKLIECS
LAREKLAMSNVRLVMSIAQRYQNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW
WIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKHKLEEKRITPSIDRIAEFLNMSHKKV
KNATDAARFVSSLDRVAFPSLNGLPGEAFHSYIADDCIENKPWHGVDEWALKHEVSDLID
TTLKEREREIIRLYYGLHDESLTWEEISKRFGLSRERVRQVGLVALEKLKLTARKRRMDA
LLVKH
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgactgcggctgctgttgttgggcttagtgctgggaaaaggattttgagatcgtctttc
tattattctgattttgccgaaaaacttacttctatcgctgaacaccgccatattattcct
acaaaaaccttaatcgtcgcaaagaaaatagctagtcataatcacagaggaattgatgct
gcttctatcattcctccaacttctgaacaatggattccgatatcctctcctttagaagag
aaaactttagatcccgaaacacctctggaagctcttcttttgcttcagaaatctatgctt
gagaagcagttagagctctcatttgaacgtacaagcttcaccgatctgcctaaggagaaa
ttgcacatcacatcatcaggaattccagctagggttcgaaggataaaggccaggaagaga
actcaggggaaaatgttatccacagaggaaagtgaggggaagaaatcttcactcagtact
gtgagtcctgagctgctacaaaatcgcttgatcggctatgtgagaggtttgacaaacaat
gaattactgactcacgcccaagtcgtgaatttatctcgaaagatcaaagctggaatatcc
ttggaggaacataaatcaagactgaaggaaaaacttgggtgtgaaccttcggatgttcaa
cttgcaaattctttaaggatggaccgttctgaattaacatcaaaactaattgagtgttcg
ctggccagagagaagttggcaatgagcaatgtacgcttggtcatgtcgattgctcaaagg
tatcagaatatgggtgctgacatggctgaccttgttcagggaggactgattggactactc
cggggaattgagaagtttgattcctccaaagggtttaagatttcaacatatgtttactgg
tggatacgacagggtgtgtctagagcattagtggagaattcaagaactttgagattacct
actcatcttcatgaaagattaagtttaattcgtaatgcaaaacataaacttgaagagaag
aggataactccatcaattgatcggatagctgaatttttgaacatgtctcataagaaagtt
aagaatgcaacagacgctgccagatttgtgtcatcactggacagggttgccttcccctct
ttgaatggtctaccaggagaggcttttcatagttatattgcagatgattgcatcgagaat
aagccatggcatggtgttgatgaatgggcactcaagcatgaagtaagcgatcttatagac
acaacactcaaagagcgcgagagagagataatacgtctctattatggtctacatgatgaa
agtttgacttgggaagaaattagcaaaaggtttggtttgtcaagagaaagagtccggcag
gtcggactagttgcgttggagaaactaaaacttacggcaagaaagcgaaggatggatgcc
ttgctcgtgaaacactag
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