KEGG   Amaranthus tricolor (tampala): 130818805
Entry
130818805         CDS       T09367                                 
Name
(RefSeq) protein CLP1 homolog isoform X1
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
atri  Amaranthus tricolor (tampala)
Pathway
atri03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:atri00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    130818805
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atri03019]
    130818805
Enzymes [BR:atri01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     130818805
Messenger RNA biogenesis [BR:atri03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     130818805
SSDB
Motif
Pfam: CLP1_P Clp1 CLP1_N nSTAND3 CbiA AAA_22 SRPRB ATP_bind_1 AAA_29 DUF1611 FtsK_SpoIIIE ABC_tran
Other DBs
NCBI-GeneID: 130818805
NCBI-ProteinID: XP_057541003
LinkDB
Position
7:3510452..3526057
AA seq 428 aa
MTATSSSRQVKLDRECELRIEVGENSPLRLRLLNGTAEIFGTELPPEIWLNFPPRLKFAI
FTWHGATIEMDSGPDTSDYVADETPMISYVNVHAILQARRNKAKSSSSNDVESSQGPRVI
VVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCIAATPIEMPIDPVEGI
PLEMPLVYFYGHTTPSANVDLYKLVVKELAKTLGRQFTGNCESRAAGMVINTMGWIEGVG
YELLLHAIDAFNADVVLVSGQEKLCSMLKDVLKSKPKVDVVKLQKSGGVVSRTPKYRQKS
RSYKIREYFYGMSNELSPHSNVASFSDWTVYRIGGGPQAPRSALPIGAEPAADPTRVVPV
NISQDLLHLVLAVSYAKNQEEIISSNVAGFVYITDIDVQRRKITYLAPSAGELPGRILLL
GTLTWLET
NT seq 1287 nt   +upstreamnt  +downstreamnt
atgacggctacgagttcttcaaggcaagtgaaattggatagagagtgcgaattacgaatc
gaagttggtgagaattctcccctccgccttcgattgctgaatggtactgctgagattttc
ggaactgaacttcctcctgaaatttggctcaattttcctcctcgcctcaaatttgcgatt
tttacttggcatggtgccacaattgaaatggacagtgggcctgatacatctgattatgtg
gctgatgagacgccgatgattagttatgtcaatgttcatgctatactacaagcacgaagg
aacaaagctaaatcatcttcctccaatgatgttgagtcctctcagggtcctagagttatt
gtggtgggccccactgattctggaaagagtactctgtcaaggatgcttcttagttgggct
gccaaacagggttggaagccaacttttgtggacttggatataggccagggaagtataacg
atccccgggtgcattgcagcaactccaattgagatgccaattgatccagtagaaggaatt
cctcttgaaatgcccttggtttacttctatggacacacgactcccagtgctaatgttgac
ttatataaattagttgtgaaagaacttgctaaaacactcggaaggcaatttactggtaat
tgtgaatcacgagctgccggaatggtgatcaatacaatgggttggatagaaggagtaggt
tatgagctgctgcttcatgctattgatgcttttaatgcagatgttgtattggtttcaggc
caggaaaagctatgtagtatgcttaaagacgtgttgaagagcaaacccaaggttgatgta
gtgaaactacaaaaatctggaggtgttgtctctcgtacaccaaaataccgacaaaaatcc
agaagctacaagataagggaatacttttatggcatgtcaaatgagctttctccccattcc
aacgttgctagtttcagtgactggactgtctatcgaattggcggtggaccacaagcacca
cgatcagctctgcctattggtgcagagcctgcagcagacccgaccagggtggttcctgtt
aacattagccaagatttgcttcatcttgtgctagctgtttcatatgccaagaatcaagag
gaaattatttctagtaatgttgctgggtttgtttatattacagatattgatgttcaaagg
agaaaaataacataccttgcaccatcagcaggagaattacctggcagaattttgctgttg
gggactttaacgtggttagaaacttga

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