Amaranthus tricolor (tampala): 130818842
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Entry
130818842 CDS
T09367
Name
(RefSeq) nuclear pore complex protein NUP98A-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130818842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130818842
03036 Chromosome and associated proteins [BR:
atri03036
]
130818842
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
130818842
Chromosome and associated proteins [BR:
atri03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
130818842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
130818842
NCBI-ProteinID:
XP_057541059
LinkDB
All DBs
Position
7:4107926..4116611
Genome browser
AA seq
981 aa
AA seq
DB search
MSGAIGQGYGAPNSSHNAFGFGSNANQNLFASHASSFGGSSTGVFGGAQSPFSSGSSRTS
WTLGSSLGGRSMDTFGASMPCTSASSISLTQGSLFPGNSPGVFGAQLPPISSAQELPFGG
SSTGVFSAPESPFLSDFSQTSWTLGSSLGASSTSAIGASSPFTSASSTSFTQGPFVSNSA
GVFRKPPPTISSPQESPFGGSSNGVFGAPHSFCGSSSGAFGSPSSPFSSASIFGGSSTGV
FGAPSPFSSTSSSILGFRHATSGSAPMFGTNSLGSAGQFNSTTSKGSTGGPPFTPLLGHR
SSSSASLSIVGDKTNTGHTISASKTAGSTTVPSFQIHNSPCSETSAGPFRISYSFLTSPR
TFTASGLPTMVGFTNNKSSNQIAGPVFGQSPSVLGTKPTNIFSTLQTTGPIIWDQTKGTR
IKPYECTTIQEAGKNVKYTSISAMSTYESKSHEELRWEDAELNSGGQQNPVSNRTQELNR
QPSKFPRYPATLGPFFPVSSMNMNTSSSIKPLPTFINFPNNQVSNQTPDLERLPSNFLLS
TPYPLFTVSSTNVGSSTNPNVDHLSGLKPLPTFPTIDTKKSMLDASNLNSSVPPQVPITP
STVASQFLATLPISNKQSSQNFQLPTEPLPLWNNGGVSFECCQPQPGVCPLPLHRSSATG
EVTDRIVAVKDPFRSEPATSQPSIGHFVCSSLVQHGISSMPVFKELVKPRSTRVSSLLKS
RNYRAQLLAVKVRKYHPSTDGPKVPFFDRGEETQFIKAYNCVVPRENPRSVFAAASTELT
YARTCKEPPIKNLTAVDDENENAEKNPINSSIPNSLKDDQTEANGNAKEAHTLMIPKLQR
PDYYTEPSIEKITSIESCNPGFCCQVKDFVVGRKGYGWVKFFGETDVRGLNLDSIVQFND
RELIVYDDESEKPAVGQGLNKAAEATLLNVICMDKTGKQYSSGKMVDKFVEKLKKVAERQ
GAEFSSYDPVDGIYKFVVQHF
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggagctattggacaagggtatggtgcgcccaattcaagccacaatgcatttgga
tttggaagcaatgcaaatcagaatctatttgcttctcatgcatcaagttttggtggaagt
tcaactggtgtatttggcggcgcacaatcgcctttttcatcaggttcttcccgaacttca
tggactctaggatcatctttaggaggaaggtcaatggatacatttggagcatcaatgcct
tgtacatcagcatcctccataagtttgactcagggatcactttttcccggtaattcacca
ggtgtatttggagcacaactaccacctatttcatcagctcaggaattaccttttggtgga
agctcaactggtgtatttagtgcaccggaatcgccatttttatcagatttttcccaaact
tcatggactctaggatcatctttaggtgcaagttcaacaagtgcaattggagcatcatca
ccttttacatcagcttcctccacaagtttcactcagggaccatttgtcagtaattcagca
ggtgtattcagaaaaccacctccaactatttcatcacctcaggaatcaccttttggtgga
agctcaaatggtgtatttggtgcaccacattctttttgtggaagctcctctggtgcattt
ggatcaccatcatcacctttttcatcagcttcaatctttggtggaagttcaacaggtgta
tttggagcaccatctcctttctcatccacttcttcctcaattctaggatttcgacatgca
acttctggttcagcaccaatgtttgggactaacagtcttggaagtgcaggtcaattcaac
tctactacttcaaaaggatcaactggagggcctccatttactccattgttgggacatagg
tctagttcctctgcttcattatcaatagttggggacaagactaatacaggtcatactata
tctgcctctaaaacagcagggagtacaactgtcccaagtttccaaatacataattcaccc
tgcagcgaaacttcagctggaccattcaggatatcatattcatttctgacctcccctcgc
acctttacagcttctggattacctacaatggttggttttacgaataataagagtagcaat
cagatcgcagggcctgtttttgggcaatctccaagtgttcttggaacaaaacctaccaat
attttttcaactttgcaaactacagggcctatcatatgggatcaaacaaaaggaaccaga
atcaaaccatatgaatgtactactatacaagaggcaggcaagaatgtcaagtatacttct
atatcagccatgtctacctacgagagtaaaagccatgaagagttgaggtgggaagacgct
gagctgaattctggaggtcagcagaatccagtcagtaatcgaacacaggaattaaacaga
caaccatcaaaattccctcgttatcctgccacccttggtccattcttcccagtatcttct
atgaatatgaatacaagttctagtataaagccactgccaacttttataaattttccaaat
aatcaagtcagtaaccaaacaccagatttggaacgactaccgtcaaacttccttttgtcc
accccatatccactcttcacagtatcttcgacaaatgtgggttcaagtactaacccaaat
gttgatcatctttctggtttaaagccactgccaacctttcctacaattgacactaaaaaa
tccatgttggatgcttcaaatttgaactcttcggttccaccacaagttcccattacacct
tcgactgttgcatctcaatttttagcaaccttgcctatttcgaataagcagtcatcacaa
aattttcagttaccaactgaacctttacctttatggaacaatgggggtgtttcatttgag
tgttgtcagcctcagcctggtgtttgtccactacctctacacaggtcttctgctacagga
gaggtcacagatcgcattgtagctgttaaagatcctttcagatctgaacctgccacctcg
cagccgtcaattggtcattttgtgtgttcttcattggttcagcatggaatctctagcatg
ccagtgtttaaagaacttgtaaaaccaagaagcacaagagtttcatctcttcttaagtca
agaaactatcgagctcagctgttggcagtgaaagtcaggaaatatcacccaagcactgat
gggccgaaggtgcctttctttgatcggggtgaggaaactcaatttatcaaggcatataat
tgtgtagttccaagggagaatcctaggtcggtgtttgctgctgcttcaactgagctaacc
tatgctcgtacttgcaaagaacctccaattaagaatttaactgctgtagatgatgagaat
gaaaatgctgagaaaaacccaatcaacagttcaatccccaactctctcaaggatgatcag
actgaagccaatggcaatgcaaaagaagctcacacgctaatgattccaaagctccaacgc
cctgactactacacagaacccagcatcgagaagataacatctatcgaaagctgtaatcct
ggattttgctgtcaagtaaaggactttgtggtgggccgaaaaggctatggctgggtgaaa
ttttttggagagacagatgtacgtggccttaatcttgactctattgtccaattcaatgat
cgggagctgatagtatacgatgatgagagtgagaagcctgcagttggacaaggccttaac
aaggcagctgaagctactcttcttaatgttatatgcatggacaagacagggaaacagtac
agtagcggtaagatggtcgacaaatttgtggagaagctgaagaaggtggctgaaaggcaa
ggggctgagttttcctcctatgatcctgttgatggaatttataagttcgtcgtgcagcat
ttttag
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