Amaranthus tricolor (tampala): 130818900
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Entry
130818900 CDS
T09367
Name
(RefSeq) uncharacterized protein LOC130818900 isoform X1
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
atri04121
]
130818900
Enzymes [BR:
atri01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130818900
Ubiquitin system [BR:
atri04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130818900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Helicase_C
PHD
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-RING_2
RING_XB3-XBAT31
PHD_5
TPR_12
TPR_10
zf-C3HC4_4
DUF2719
ARMET_N
Motif
Other DBs
NCBI-GeneID:
130818900
NCBI-ProteinID:
XP_057541139
LinkDB
All DBs
Position
7:5064109..5082113
Genome browser
AA seq
1654 aa
AA seq
DB search
MGRIKQKPRRSVGVFVSGSTITSGKKTAKTNSSNDVEPKPKIDDDIVQDTPFFVDVDRSS
WNLIEHRDISEIVISNLKFSHEFFGFNLTDEFYLRIRLCNVDEHLGRIKLGHWPVLSSKN
VYLEIINKRLVDEIEICDVIVCGQFDGSDEGVTGLVHLVSLKFLTLRPVFSVKLCEDVSS
LRIRVEMLQGAFDACESVLDNNRPVWKKSMMSVMGWLRPELMNSETRYGIFSKVGVDLSS
DSDSGGMECSTFDVGRFYEAIKRSKHCPMLDVELPDLVPELRPYQSRAAYWMVQREKGAL
QDFSLEWEQILFHSPLCVAMNFLDSCSRMFYNPFSGNISLWQEIPPSYVTGGILADEMGL
GKTVELLACILAHRKSSSVCGSSSGSIIDGRETENIRFKRLKRERVECVCGALSESYKYE
GLWVQCDVCDAWQHADCVGYSPSKDRQRAKEAYKSQYKNKKRKKNDPNIVLKNGEYVCQI
CLQLMQATSSPIESGATLIVCPTPILPQWHAEILRHTNPGSLRTCIYEGVREISLWNSPA
MDINELVSADIVLTTYDVLKDDLSHDSERHEGDRRILRYGKRYPVVPTLLTKVFWWRLCL
DEAQMAENNVAAAAEMALRLHARHRWCITGTPIQRKLDDLYGLLRFLKASPFDVPRWWAE
VIREPYERKDVAAMGFTHQLFRQLMWRSSKSHVADELELPPQEEHISWLSFSAVEDHFYQ
RQHETCVHFAREVLERFKSEIQKRECSDALLSVSDPSITHLEAEKLLNSLLKLRQACCHP
QVGGSGLRSLQSSPMTMDEILSVLISKTKIEGEEALRKVVSSLNGLAGIEIIRGELFNAI
TLYKEALALSEEHSEDFRLDPLLSLHIHHNLAEVLKSAPNRIPEKKPSQNSSITSCLDRV
NKQNSNGEESLERAGSTDNLSRLNCISSTNGSEDVNNSEPHALHVSSVESLSNICKGIKQ
KYLSGFYTKLSQAQQDFQKSYMQVCDASNDKENKTSVWWLGALEQIEQNEEAANELSQKI
ENAVLASQNASKSSRTSSRFRSIKALQYTIQRGLDTLEASRKRLLDQLLEIDQTMEKPRD
ADVERVRYCPNCYFNVDGHLCVHCEMDELFQAYEARLFLKRGNNGVIISSAEEAVDLQKK
RLERNQFYSNLAQKSKNEASSSVNIFGRSKRNAGNMLMDSRFPSELEIILGAIKNYFKAY
LGREGISEASRHLVLLENMRKEYSHARSLATAQAQVLRAYDEIKMATSRLRLKDNNEDNS
IDALSLEELDVASVENSSEKFVSLAALSRIRGKLRYLKGLVNSKQKSETDNAVAASLDSP
PSKNDINIRLAEETCPICQETLQNQKMVFPCGHITCCKCLFAITERNAIPNSKVQDKWVI
CPTCRQHSEFESIAFADDARNKSLVEKNENSEASVSVQGSYGTKIEAITRRILWIKSCDP
KAKILVFSSWNDVLDVLEHAFSANEISFVRMKGGRKRSQTVLSAFKGQKMVEKGSGKMND
QHKPETKFIQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAVEAQAISRVHRVGQTSKTC
VHRFLVKDTVEESIYRLNKSRNASSIISGNKKNQDLPILTLKDIESLFAVSPPATETAAT
TADSNDEQSGSLAHLPPSVAAAIAAERRLGQSTL
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
atgggcagaattaaacagaaacctagacgttctgtgggagtatttgtaagtggaagcact
atcacttcaggtaaaaaaacagctaaaactaattcttctaatgatgttgagccgaagccg
aaaattgatgatgatattgttcaagatactccctttttcgttgatgttgatagaagtagt
tggaatttgattgaacatagagatatatctgaaattgtaataagtaatttaaaatttagt
catgagttttttgggtttaatttaactgatgaattttacttgagaattagattatgtaat
gtggatgagcatttgggtaggattaagttgggacattggcctgtgttgtcatctaaaaat
gtttatctggagattataaataaaaggttagttgatgaaattgaaatttgtgatgtgata
gtttgtgggcagtttgatgggagtgatgaaggtgttactggtttagttcatttagttagt
ttgaaattcttgacattgaggccggttttcagtgtcaagttatgtgaggatgtttcttcg
cttagaattagggtggaaatgcttcaaggtgcatttgatgcttgtgaatcagttctagat
aacaataggccagtatggaaaaaaagtatgatgagcgtaatgggttggcttaggcctgag
ttgatgaattctgagacacggtatggtatattcagtaaagtgggagtggatttaagttca
gattcggatagtggcggcatggaatgttcaacttttgatgttggtagattctatgaagcc
attaagcgttctaaacattgtcccatgttagatgttgagttgcctgacctggtgcctgag
ctaagaccatatcaaagccgggctgcttattggatggtacaaagagagaagggtgctttg
caggatttctccttggagtgggaacaaattctttttcattctcctttgtgtgttgcaatg
aattttctcgactcttgttcaagaatgttttacaatccatttagtgggaacatctccttg
tggcaagagatccccccttcatatgtcactggaggtatccttgctgatgagatgggcttg
gggaaaactgttgagcttctcgcatgtatattagctcatcggaagtcatcttcagtatgt
ggcagttcttctggaagtataatagatggtcgtgagacagagaatattagatttaagaga
ctgaaaagagagcgggttgaatgcgtatgtggtgcactgagtgaaagttacaaatatgaa
ggattgtgggttcagtgtgatgtttgtgatgcatggcagcatgcagattgtgttggttat
tcgccttctaaagacagacaaagagctaaggaagcctataagagtcaatacaagaataag
aaaaggaaaaaaaatgatcctaacatagtcctgaagaatggcgagtatgtctgccaaatt
tgtttgcagttgatgcaagctactagctctcctattgaatctggagcaacccttattgta
tgtcctacacccatactgccgcagtggcatgctgaaattcttcgtcatacaaatccaggt
tctctgagaacttgtatatacgaaggtgtaagagaaatttccctatggaattcccctgca
atggatatcaacgaactagtctctgctgacattgtgttgacaacttatgatgtgctgaaa
gatgacttatcacatgactcagagaggcatgaaggggatcgtcgcatattgagatatgga
aaaaggtatcctgtggttccaactcttctcacgaaggtgttctggtggaggctttgctta
gatgaagctcaaatggcggagaataatgttgctgctgcagcagagatggcactgcgtctg
catgcaagacatcgttggtgtattacaggaactcctattcaaagaaaactggatgattta
tatggtcttcttagattccttaaagctagtccatttgatgttcctaggtggtgggctgaa
gttatacgagaaccttatgagcgcaaggatgtagcagctatgggattcactcaccaatta
ttcagacaactgatgtggcgttcttcaaagtcacatgttgctgatgagctagagcttcct
ccacaggaagaacacatttcctggctttctttctccgcagttgaagatcacttctaccag
aggcaacatgaaacatgtgttcattttgctcgcgaagttcttgaaaggttcaaaagtgag
attcagaaaagggagtgctcagacgccctattatctgtttcagatccttctattacgcat
ttggaggctgaaaagctgctaaattcacttttgaagctgcgtcaagcctgctgccacccg
caagttggaggatctggactgcgttcgctccaaagttctcccatgactatggatgaaata
ttatctgttcttataagtaaaactaagatagagggggaggaagcattgaggaaagtagtt
tcttcattaaatgggcttgcaggtatagagattatccgaggcgaattatttaatgctata
acgttatacaaagaagcattagctttatctgaagaacattctgaagatttccgcctggac
cctttgctaagtcttcacatacatcataatctagctgaggttctcaaatcagctccaaac
agaatccctgaaaagaagccttcacaaaacagtagtatcacttcttgtcttgatcgtgta
aacaaacagaattctaatggggaggaaagcttagaaagggctgggagtactgacaatctt
tctagactgaactgcatttcttcaacaaacggctcagaagatgttaataattcagagccc
catgcactgcatgtctctagtgttgaaagcttgagcaatatatgcaaaggtataaaacaa
aaatacttatctggattctacacaaagttgtcacaagctcaacaggatttccagaagtca
tatatgcaggtttgtgatgcttcaaatgacaaagagaacaagaccagtgtctggtggctt
ggagctcttgagcaaattgagcaaaacgaagaagcagctaatgaattgtcacaaaaaatt
gaaaatgctgttttagccagccagaatgctagcaaatcatcaagaacttcctcccgtttt
cggagtataaaggcacttcaatatactattcaaagaggcttggacacactggaagcttct
cgaaaaaggttgttagatcaactgttagagatcgatcaaacaatggaaaaaccaagagat
gcagatgtagaacgtgtacggtactgccccaattgctattttaatgtggatggccatttg
tgtgtccattgtgaaatggacgaattattccaggcttatgaggctaggctctttcttaaa
agagggaataatggcgtaattatctcatctgctgaggaggcagtagatctacagaagaaa
agattggagaggaatcaattttattcaaatttggcgcaaaagtcaaaaaatgaggcatcg
tcaagtgtgaatatttttggcagaagcaaaaggaacgcagggaatatgttgatggattca
agatttccatctgagctggaaataatcctaggtgcaataaagaactattttaaggcatat
ttaggtagagaaggtatatcagaggccagcagacacctggtccttcttgagaatatgagg
aaggaatattctcatgctagatcactagctactgctcaagctcaggttcttcgtgcatat
gatgaaattaagatggcaacttcaagattacgcttaaaagataataatgaagataattct
atagatgccctgagcctagaagaactggacgttgctagtgtggaaaattctagcgagaaa
tttgtgtctttggcagcattatcacgaataaggggaaaacttcggtatttgaagggatta
gtaaattctaaacagaaatcagaaacagacaacgccgtagctgcttcactagattccccc
ccttcgaagaatgatattaatatcagattggctgaagaaacgtgtcctatatgtcaagag
acacttcaaaatcaaaaaatggtgtttccatgtggacatataacatgctgcaaatgtttg
tttgcaataactgagcgcaatgcaattcctaatagcaaggttcaagacaagtgggtgatt
tgtcctacttgtcggcaacattctgaatttgagagcattgcttttgctgatgatgcgcgg
aataaatccttagtcgagaagaatgaaaattccgaggcttctgtatctgtccagggatca
tatggcacaaagattgaagcaataacaaggagaatcctatggataaagtcatgcgatcca
aaggctaagatacttgttttttccagctggaatgatgtccttgatgttttggagcatgct
ttttctgctaatgagattagctttgttcgtatgaaagggggaaggaaaagatcacaaact
gtgttgagcgcttttaaaggacagaaaatggtggaaaagggtagtggcaagatgaatgat
caacacaagccagagacaaagtttatccaagtgctgctactcttagttcagcatggagca
aatggccttaacctcctggaagctcaacatgtcattcttgttgagcccctcctcaatcca
gctgttgaagcacaagcaatcagtagagttcaccgcgttgggcagaccagtaaaacttgt
gttcatcggttcctggttaaggataccgttgaagaaagcatttacagattgaacaagagc
agaaacgccagttctattattagcggaaataagaaaaaccaagatctgccaattttgacc
ttgaaagacatcgagtccctgtttgcagtatcacctcccgcaacagaaacagcagcaaca
acagcagacagtaatgatgaacaaagcgggagtttagcgcatttaccgccatctgtggct
gctgccatagctgccgagagaaggcttggccaatctaccttgtga
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