Amaranthus tricolor (tampala): 130818970
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Entry
130818970 CDS
T09367
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
130818970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
atri04121
]
130818970
Ubiquitin system [BR:
atri04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
130818970
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
DUF7885
F-box
Motif
Other DBs
NCBI-GeneID:
130818970
NCBI-ProteinID:
XP_057541245
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All DBs
Position
7:20270211..20274952
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AA seq
608 aa
AA seq
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MGQESPIPKTPLEKPISKIQSFSSISPNFPEEVLEHVLSFIESHSDLNSISLVCKSWYEI
ERWSRRKIFIGNCYAVSPPIVIRRFRDIRSVTIKGKPHFADFNLVPDGWGAHAYPWIQAF
TEAFPMLEELRMKRMVVTDDGLELIGKKWKNFKVLVLCSCEGFTTDGLAFIAANCRKLRT
LDLCESEVEGSGEWIRFFPDSYTALESLNVACLTTEPWFNHLEGLVSRCTNLKSLRLNRT
VSLERLSTLLEKAPQLVDIGTGSFLSELETEAYDKLTKTFAGCKGLKGLSGLYDVVLNYL
PALYPVCSGLTSLNLSYATIHSPDLIKVLSLCQNLQRLWVLDYIEDSGLEVLAESCKDLR
ELRVFPSEPYVEEPNVCLTEHGLVSVAMGCSKLQSVLYFCRQMTNEALFTIAKNRPNLTR
FRLCIIEPQCPDYLTSQPLDEGFGAIAEHCQDLCRLSLSGLLTDRVFHLIGTHAKKLEML
SLAFAGDSDLGLHYILSGCKNLRKLEIRDCPFSGRALMVNAAKLMTMRSLWMSSCQVNYG
ECKLLGKKMPKLNVEVMDERGHPVSRSDDCPVEKLYIYRSVVGPRSDSPDYVWTMSEENT
DVTVNLSQ
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggggcaagaatcacctatacccaaaactcctcttgaaaaacccatttcaaaaatccaa
tctttttcttctatctccccaaatttccctgaagaagttctagagcatgtactctccttc
attgagtcacactcggaccttaactcaatctcactcgtttgcaaatcttggtacgagatt
gaaagatggtctcgtcgtaaaatctttattgggaattgctatgctgttagccctccgatt
gtaatcagacggtttagagacatccgatctgttaccatcaaaggaaaacctcattttgct
gattttaatcttgttcctgatggttggggagcccacgcttatccatggatccaagctttt
actgaagcttttcccatgttggaagagcttagaatgaaaagaatggtggttactgatgat
gggcttgagttaattgggaaaaaatggaagaattttaaggttttagttttgtgttcttgt
gaaggttttactactgatggtttagcttttattgctgctaattgcaggaagttgagaaca
cttgacttgtgtgaaagtgaagttgaaggcagtggggaatggatacgctttttcccggat
tcttatacggcactagaatctcttaatgttgcgtgcctcaccactgagccgtggttcaat
catctcgagggtttagtgagcagatgcactaaccttaaatcacttcgtctcaaccgaaca
gtctccttagagcggctttcaacccttttggaaaaggctccgcagttggttgacattggt
acgggctcttttttgagtgagctcgaaactgaagcgtacgataagcttactaagacattt
gcggggtgcaaagggctaaagggtctttcgggtctctatgatgtcgtcctgaattatctt
cctgctttatatcccgtctgctcggggctgacgtctttgaacttgagttatgctactatt
cactcccctgatctgatcaaagttctcagtctctgtcagaatctccagcgtctttgggtt
cttgattatatagaagacagcgggcttgaagttcttgcagaatcatgtaaggatctccgg
gagctacgggtttttccttctgagccatatgtcgaggaaccgaatgtttgcttaaccgaa
catggtttggtatcggtcgccatgggttgttccaaactacaatccgtcctttatttttgt
cgtcaaatgaccaatgaagcgttattcacgatagcaaaaaatcggcccaacctaacacgt
ttccgtctatgcatcattgagccccagtgcccggattacctaacaagccaaccgctagat
gagggttttggggccattgcggaacattgccaggatctctgccggctttcattgtcaggt
ctcctcaccgaccgtgttttccatctcatcgggacccatgccaagaagctcgagatgctt
tcattggcgtttgcgggtgacagcgatttgggcttgcattatattttatccggttgtaag
aaccttaggaagctggagattcgggattgccctttcagtggaagggcgctcatggtaaat
gcggctaagttgatgacaatgcgatccctttggatgtcttcttgccaagtaaattacggg
gagtgtaaactgcttggcaagaagatgccgaagttgaacgttgaggtgatggatgaaagg
ggacaccctgtttcgagatctgatgattgcccggttgagaagctttatatctaccggtca
gttgttggacccagatcggactctccagactatgtttggacgatgagcgaagaaaatacc
gatgtaactgtaaatttgtcgcagtag
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