Amaranthus tricolor (tampala): 130820460
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Entry
130820460 CDS
T09367
Name
(RefSeq) protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1-like isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130820460
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130820460
Surveillance factors
Other surveillance factors
130820460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
DUF4787
Motif
Other DBs
NCBI-GeneID:
130820460
NCBI-ProteinID:
XP_057541825
LinkDB
All DBs
Position
8:complement(30149479..30160333)
Genome browser
AA seq
1527 aa
AA seq
DB search
MSARKIDLPVDPLLSTTKASLENGDEKVTLEFLDEVKDQAASENNIPLSPQWLYAKPSDA
KSDVRGLNTLSLGNPSDQSQKESDKKDWRKLASENENTRRWREEERETGLLGRRDGRKTD
RRVENVSVRESTESRSLPSSERSTNRNSVHDARRDTKWSSRWGPEDKEKDSRPERRTDVE
KEDAHIDGQLSGSGSRDAEFRDKWRPRHRTEPTSGAPTSHRAAPGFGVDKGKLDVRNFGF
TVGRGRSSGGSIVKPPLGSTSATVQVDKDEHILGKPSLSVDPFRYSRSKILDIYRVQKLD
ATSFCKPDLMDEVPSLTRMEAVEPLAFIAPDAEEEAILNDIWKGSIIGSGASYSPFRKGN
LAEVATGTGHMDSIEENQNVFPPNIAKDAVEERPAEYAAAFNVWVTESAGPMSGAPKFSD
VTITHDDNYNIKAAEIERAAFDMSSKLPDDSNSLFVSESLDDSRCNNLLYSQSVRDVNCV
GDCVSPEELSLYYRDPQGEIQGPFLGVDIISWFEQGFFGADLPVRLADAPETAPFHELGD
VMPHLVVQEGLGIRSDIGSKMDNLGGSAPSSEINDLSTLDCQSWQRSELDDHLNQPAHSL
KVEHDIPSKHAFSDGKGHNDSSAQDEEIVFPGRPGSGDNSVARNLRSADGPIANIAGYHT
HSNGAKETGMSIQKDDKLHPFGLLWSELEGNSTRHSQPVNMPSTTGMPGPLLGHSAGGVS
PFSGISDQNIDETWSNFYDKAPISNSNILWDSLDAQQFSHLDQESNHRELAEHIISIQLQ
QQQQQQRIQQRNRLSQLSHLNDSPLDQVPGRASLHQQLANQPLSELERIVALEQQRQLEL
QQHLRQQQLQKIFLQEQELQARQYDQFLHAPEAGFAHSHIDPTTSLDQILMKQHLRDSQA
HLHQPSRHSDPTLEQFIQAKLGHTTHQDRQAGLLEMMQHTRNEPFRSHQMLQQEQLQAQQ
MSMGVRHRLEMGEVRPTGSIWPVEEAEHFLRNPVGSQRAHSAAFSPPLFSPLDMLQQQEH
RAKEEQLREFERNLLQERLNRGLYDPGTVSFELAMPMQGGVSGGNLELANAMARLQGLDI
QDPNNHVRSAGHLGSLNSGTHTHHPHHSFLSNEFNTHHDVEGHWHDNDSRMSNDWMDSHM
QQLHLHSEQQKREKLLGEDNSKRLFMELLHQKTNNQPTQPLNFNDSAPLERTPSGFFPGS
SSVEPLFNFALDRDVGLASPAAVPSFVNIPDEQTQRRDEQRGGFDTSGRLSGRSNSGLVV
EAESIYPGIGRNSSLIFNNADMSVSSYIDREFSEAERKKWAPKIEGLVNESAVDMSENLS
KQPGVAPLDGREIQANSVNRQTSIGIAAGQGGFYNEKFGQSKSFAEEVDRMPGALSRGSE
NVLFKRPLVSRPFSPQDGMSDLTVDAATKGMNPPISTLDGGRRDLGSNTAVQAPDTSKKD
MRFRRTNSCSDSDVSDTSFIDMLKSNAKKPPQPDAHATGASESYDATHVGKSGKKKGKKG
RQIDPALLGFRVTSNRIMMGEIQRIED
NT seq
4584 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctcgcaaaattgatctaccggtcgatccccttctatcaaccaccaaagcctct
ctagaaaatggtgatgaaaaggtcacattggaattccttgatgaggttaaagatcaagca
gcttctgagaacaacattccactgtccccgcaatggctctatgccaaacctagcgatgct
aagtcggatgttcgtggtctgaacacgctgtctcttggaaatcccagtgatcagtctcag
aaggaaagtgacaagaaggactggaggaaattggcttctgaaaatgagaacacaagacgt
tggcgtgaggaagaaagggaaactggcttgcttggcagaagagatggcaggaaaacagat
cgtcgcgttgaaaatgtttctgtcagggaaagtaccgagtcaagaagtttgccctcttct
gaacgttcaacaaatcgcaactctgttcatgatgcaaggcgtgataccaaatggtcttct
agatggggtcccgaagacaaggagaaggattcacggcctgagaggagaacagatgtggaa
aaggaagacgctcatatcgatggtcaattaagtggaagtggcagtcgtgatgctgaattc
cgtgataagtggagacctcgtcatagaacagaacctacttccggcgcacctacttcacac
cgtgctgcgcctggcttcggggttgataaaggaaagctggatgttcgtaatttcggattt
actgttggaagagggaggtcaagtgggggatctattgtaaagcctccactggggagtaca
agtgccactgtccaagttgacaaggatgagcatattcttgggaagcctagtctttcagtg
gatccttttcgttactctaggtcgaagattcttgacatctaccgtgttcaaaaacttgat
gcaacttctttttgcaagcctgatttaatggatgaagtgccctcgttaacccggatggag
gctgttgagccattggctttcattgcaccagatgctgaggaagaggcaatacttaatgat
atatggaaggggtcaatcattggcagtggggcttcttatagtccatttagaaagggaaat
ttagctgaggtcgccacaggtactggccacatggattctattgaagaaaatcagaatgtt
tttcctcctaatattgcgaaggacgctgttgaagaaagaccagctgaatatgctgcagca
tttaatgtttgggtcacagaatctgcgggaccgatgtcaggagctccaaaattttctgat
gtaacaataacccatgatgacaattataatatcaaggctgctgagattgagcgtgctgct
tttgatatgagttctaaacttcctgatgattcaaactctttgtttgtgtcagaatctctt
gatgatagccgttgtaacaatcttctgtattctcagagtgtgagagatgttaattgtgtg
ggagactgtgtatctcctgaggagttaagcttatattaccgggatcctcagggagaaata
cagggtccatttcttggggtggacatcatttcatggtttgaacaaggtttctttggtgct
gatttaccagttcgcttggcagatgctccagaaactgccccttttcatgagttgggtgat
gtaatgcctcacctcgtagttcaagaagggcttggtatcaggtcagatattggttccaag
atggataacctgggagggtctgcaccttccagcgaaatcaatgatttgagcacattagat
tgtcaatcttggcagcggtctgaactggacgatcacttaaatcagccagctcactctcta
aaagtggagcatgatattccatcgaaacatgcattttctgatgggaaaggtcataatgat
tcttctgctcaggatgaagaaattgttttccctggaagaccaggcagtggtgataactct
gttgcgagaaatttgagaagtgctgatgggcccattgcaaatattgctgggtatcatacc
cattcaaatggagctaaagaaactggcatgtcaattcaaaaggatgataagctgcaccct
tttggcttgttgtggtctgaacttgaaggtaattcaaccaggcattcccaacccgtaaat
atgccttctaccacgggtatgcctggccctcttttgggtcattcagctggtggagtttct
cctttcagtggaatctctgatcagaatattgatgaaacatggtccaacttttatgacaag
gctccgatttctaattcaaacatactttgggactcattggatgcccaacaattttctcac
cttgatcaagaatctaatcatcgtgaattagctgagcatataatatcaatacaacttcag
cagcagcagcagcagcagcgtattcaacaaagaaatcggttgtctcaactttctcacttg
aatgattcacctctagatcaagtgcctggtcgagcttcgctgcatcagcagctggctaat
caacctttatctgaacttgagcgcattgtggctcttgagcagcagcgtcagctggagcta
cagcaacatttgcgacagcagcagcttcaaaaaatttttctgcaggagcaggaattacaa
gctagacaatatgaccagtttcttcatgctcctgaggctggctttgctcattctcacata
gatcctactacgagcttggatcagattttgatgaagcagcatcttcgtgattcacaagcc
catttgcaccagccttcaaggcatagtgatccaactctggaacagtttattcaagcaaag
ttaggccacacaacacatcaagatcgccaggccggtctcttggaaatgatgcagcatact
cgcaatgaaccatttcggtctcatcagatgcttcagcaggagcagctacaggcacagcaa
atgtcaatgggcgtaaggcatcgactggaaatgggggaagtaagaccaactggctccatt
tggccagtggaagaagcagagcattttcttcgcaatcctgttggttctcaacgagctcat
tctgctgctttcagcccacctctatttagccctttagacatgctgcagcagcaggagcac
agagcaaaagaggagcagctaagagagtttgaacgaaaccttttgcaggagagactaaat
agagggctatatgatcctgggacggtgtcctttgaactggcaatgcctatgcaaggtgga
gtttcaggtggtaacttagaattggccaatgctatggcccgattgcagggcttggatatt
caagacccaaacaatcatgtacgttctgcaggtcatcttggctccttaaattctggcacc
catactcatcatcctcaccattcttttctttctaacgaattcaatacacatcatgatgtt
gagggccattggcatgataatgatagtcgtatgtcaaatgattggatggattcacatatg
caacagctgcatcttcattctgagcagcagaaaagagagaaactacttggtgaagacaac
tcaaagagattgttcatggaactgttgcatcagaaaactaacaatcaaccaacgcaacct
ctaaatttcaatgacagtgcacctttagagagaacaccttctggattttttcctgggtca
agctctgtagagcctttgtttaactttgcccttgatcgtgatgtcggtctggccagcccc
gctgctgttccatcttttgttaatattccagatgagcaaactcaacgccgagacgagcag
aggggtggctttgacactagtgggagattgagtggtcgatcaaactctggtttagttgta
gaggcagaatctatctatcctggaatcggtagaaattcttctttgattttcaacaatgct
gatatgagtgtaagctcttacatcgacagagaattctctgaggcggagagaaagaagtgg
gctcccaaaatagaaggtttggtaaatgaatcagcggtggatatgtcagagaatctttct
aagcaacctggtgttgcaccactagatggaagggagatacaagccaattccgtcaatagg
caaacctccattggtattgctgctggacaaggtggtttctacaatgaaaagtttggacaa
tctaagtcctttgctgaagaggttgataggatgcctggtgctctttccagagggtcagaa
aatgtcttgtttaaacgtccacttgtttctcgtcctttctcacctcaagatggtatgtct
gatctaactgttgacgctgccactaaaggaatgaacccaccaataagcactcttgatggc
ggaagacgagacttaggaagcaacacagctgtccaagctcctgatacttctaaaaaggat
atgcgattcaggcgaactaattcttgtagtgattccgatgtctctgatacatcattcata
gacatgttaaagagcaatgctaagaagccaccgcaacctgatgcacatgctacaggtgct
tcggagtcttatgatgctacccatgttggtaagagcgggaagaagaaaggaaagaaagga
aggcaaattgatccagctcttctcggtttcagggtcactagcaatcgtatcatgatgggc
gagattcaaaggatcgaagattaa
DBGET
integrated database retrieval system
