Amaranthus tricolor (tampala): 130820524
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Entry
130820524 CDS
T09367
Name
(RefSeq) DNA repair protein RAD4
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
130820524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atri03400
]
130820524
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
130820524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
DUF8083
Motif
Other DBs
NCBI-GeneID:
130820524
NCBI-ProteinID:
XP_057541918
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Position
8:15294739..15301819
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AA seq
883 aa
AA seq
DB search
MAGNEESSTKQKKSKGKSKFQSVDIIRDNQPLKFRQISTNNNLEEEPQFEDNDAEWEEGC
IQYSSFDNNGNNDKDIKGVTVEFDALPESPKKKRIRRVTAEDKEYAELVHKAHLLCLIAR
GRLIDAACDDPLIQAALLSLLPPHLLKISETSQLTANALTPIISWFHQNFHVKGLDSAEK
PFHSALTSALEAHGGSPEEVAALSVVLFRALNLTTRFVSVLDVASLKPDHDVDELPYFES
RRHRKGIFSSSTLMVSGMSTGASLSKSSTANGKNILGTFVKRENLSTDIQVKDSLESNQL
KHSDQTIGETQNSSEDDKRPKRKGDLEFEMQLQMAMSSTALIAPERKLEASTSDSPSSPL
HSCSPFKKLKRIAEESSSSSQAISTAFGSRKVGAPLYWAEVYCSGENMTGKWVHIDAVNA
IVDGELKVEAAAAACKKSLRYVVAFAGHGAKDVTRRYCAKWYKISPHRVFSEWWNAVLSS
LKELELRATSGVVPLHQCGMKSTDIMGEKSKHLNQGCASGKSSFAENYVNFDKEHQKFAI
SSSSIDNRGALEDIELATRALTEPLPTNQQAYRNHPLYAIEKWLTKYQILHPKGPVLGLC
SGHTVYPRSCVQTLHTKERWLREGLQVKENEPPSKVVKSNSRKRSGQAVEIDEFSETGSD
GVVSLFGKWQTEPLRLPPAVDGIVPKNERGQVDVWSEKCLPPGTVHLRFPRLVPVAKRLG
INFAPAMVGFEFRNGRSVPVYEGIVVCTEFKEVILEAYAEEEQRRHEEEIRKEERQALSR
WYQLLSSMVIRQRLNNTYVYNQESETVAVPFKTEKKTCADITNLNEITEPCQEKVCATKI
IGSDMLTQDHEHVFLTDDESFDEDSMTRSKRCRCGVSIQVEEL
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaaacgaagaatcgagtactaagcagaagaaatccaaagggaaatcaaaattc
caaagtgtagatatcatcagagacaatcaacctctgaaattccgccaaatttccactaac
aataacctagaagaagaaccccaattcgaagacaatgatgctgaatgggaagaaggatgc
attcaatattcttcatttgataacaatggtaacaatgataaagatattaaaggtgtaact
gttgaatttgacgctttgcctgagtctcctaagaagaaacgtattcgaagagttactgca
gaagataaggaatacgcggagttagtgcataaggcgcatttgctatgtttgattgcaaga
gggagactaattgacgcagcttgtgatgatcctcttattcaggctgctctactgtcactt
ttaccaccacacttgctgaagatatcagagactagccaacttacagcaaatgctttgact
cctattatctcttggttccatcagaattttcacgtgaaaggacttgacagtgccgagaaa
ccattccattcagctctgacatccgctttggaagcacacggaggaagccctgaagaggtt
gctgcactgtctgttgtactattcagagctctaaatcttacaacgaggtttgtgtcggtt
ttggatgtagcttccttgaaaccagatcatgatgtagatgagctaccatattttgagagc
aggaggcataggaaaggtatttttagctcttccacacttatggttagtggaatgagtacg
ggagcaagtcttagcaaatcatctactgccaatggaaagaatatccttggaacttttgtt
aagcgagaaaatttatcaacagatattcaagtgaaagattcacttgaatctaatcaattg
aaacattcagatcaaacaataggtgagactcaaaacagttctgaggatgataagcgtcct
aagaggaagggagacttagagtttgagatgcagttgcaaatggcaatgtcctccactgca
ttgatagctcctgaaaggaaacttgaggcttctacaagtgactctcctagtagtccattg
cactcttgctctccttttaaaaaactaaagcgaattgctgaagaatcttcgtcatcctct
caggctatatcaactgcttttggatccagaaaggtaggagctccattatattgggcagag
gtctactgcagtggtgaaaacatgacagggaagtgggtccatattgatgctgttaatgct
attgttgatggagagctgaaggtcgaggccgcagctgctgcatgcaagaagtctttgaga
tatgtagttgcgtttgctggacatggggctaaagacgtcacacgcaggtactgtgcaaag
tggtacaaaatatcgccacatagagtattttcagaatggtggaatgctgtgctatcttca
ttgaaagagctggagttacgtgcaacaagtggagttgtccctttacatcagtgcggtatg
aaatccacagatattatgggagaaaaatcaaaacatctcaaccagggatgtgcttcagga
aagagtagttttgcagagaactatgtaaatttcgataaagagcatcagaaatttgctatc
agtagctcctcaattgacaatagaggtgccctggaggacatagaattagcaacaagggca
ttaactgaaccccttcctactaatcaacaggcgtatagaaaccatccattgtatgctata
gaaaaatggcttaccaagtatcagattttgcatcctaaaggtcctgtacttggtttgtgt
tctggtcacactgtttatccaagaagttgcgtacaaacactccacacgaaagaaagatgg
cttcgtgaggggctgcaagttaaagaaaatgagcctccttcaaaggttgtgaagagtaac
tctaggaaacgtagcggacaggctgttgaaatagatgaattcagtgagactggttcagat
ggagttgtttctctgtttgggaagtggcaaactgaaccactgcgtttgccccctgcagta
gatggaatcgtacctaagaatgagcgtggtcaagtggatgtttggtctgagaagtgccta
cctccaggcactgtacatctgcgattcccaaggttggttcccgttgcaaagagacttggg
atcaatttcgctcctgctatggttggatttgagtttcgaaatggacgctcagttcctgta
tacgaaggcattgtggtctgcaccgaattcaaagaagtaattctggaggcatatgcagag
gaggagcagagaagacatgaagaagaaatcagaaaggaagagagacaggcactctctcgg
tggtaccaacttctctcatctatggttatccggcaaaggttaaataacacatatgtttac
aatcaggagtcagaaactgtggctgtgcctttcaaaaccgagaaaaagacttgtgctgat
attacaaatttgaatgaaataactgagccttgtcaagaaaaagtgtgtgcaactaagatt
attggatcagacatgctcacacaggatcacgaacatgtcttcttgacagatgatgagagt
tttgacgaggacagcatgacacggtctaaacggtgtcgttgtggggtttcaattcaggtg
gaagaactatag
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