Amaranthus tricolor (tampala): 130820805
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Entry
130820805 CDS
T09367
Name
(RefSeq) phytochrome A-like
KO
K12120
phytochrome A
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
130820805
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Gene cluster
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
PAS_4
HisKA
PAS_9
Motif
Other DBs
NCBI-GeneID:
130820805
NCBI-ProteinID:
XP_057542305
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Position
8:7700207..7707704
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AA seq
1125 aa
AA seq
DB search
MSSSTPNQGSKNFGRLNDKARIMAQTIVDAKLHANFEDSSSDFDYSSSIRATSCIGRKQP
PKTDKVTSSYLIRIQKGKIIQPFGCLLALDENTFRVIAYSENASEMLTMVSHVVPSIGNH
PMIGIGTDVRTIFTAPSASALQKALEYPDVSLLNPILVHSKASGIPFYAIIHRVTSSLVI
DFEPVKLYEVPMTVSGALQSYKLAAKAITRLQSLPSGNLGRLVDTMVQAVFELTGYDRVM
AYKFHEDDHGEIVSEITKPNLDPYLGLHYPATDIPQAARFLFMKNKVRLICDCRAKGVQV
IQDQIHPFELTLCGSTLRAPHGCHVQYMENMNSIGSLVMAVVVNDEDGENNGAIPATPQQ
KRKRLWGLVVCHHTSPRFVPFPMRYACEFLAQVFAIHVNKELVLENQFLEKKILKTQTLL
CDMLMRDVPLGIVTKSPNIMDLVKCDGAVLLYSDKLWKLGVTPTDDQVRDIALWLSIHHE
NSTGLSTDSLYKAGYPGALTLGGSFCGMAAVKITSKNIVLWFRSHTAAELKWAGEKHRPN
DKDDESKMHPRSSFKVFLEVVKNRSVPWKDFEMDAIYSLQLILRNAFKDREAADVNTSII
NSKISDLKIDGIKELKAVTHEMARLIETATVPIFAVDSGGFVNGWNTKISELTGLPVIKA
VGKHISELVADTSIDIFWNLLHLALQGKEETNVQFEIKRHHSVVDSPVILVVNACSSKDV
NGNVIGACFIAQDITGQKSVMDKFTRIEGDYKAIVHNPTPLIPPIFGTDEFGWCSEWNPA
MSKLTGYEREDVIDKMLLGEVFGTQKACCRLKNLESFVNLGVVLNGALSGQDTEKIPIGF
FTRNGKFIETLICVSKKLNRDGAVTGVFGFLQLASQDFQDTFHVQRLAEQAALKRLKALA
YMKTQIRNPLSGIMFSRKMLEGTDIGEEQRLLLHTSAQCQRQLNKILEDSDLDSIIDGNI
ELEMVEFSIQDIVVASMSQIMAKSNDKGIRIENETSEEFLKETLCGDSLRLQQVLADFLF
VSVTCTPAGGQVGIKVGLVKYKVEESVLLANLEFRILHTGGGITEELLGQMFESNKDNAT
EEGISLLISRKLVKQMNGDIQYLRSAGSSTFIISVKLAVVDKATQ
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgtcaacaccaaatcaaggttccaaaaattttggacgcttaaacgacaaagcg
agaattatggctcagactattgttgatgcaaagcttcatgcaaattttgaggattccagc
agtgattttgattactctagttctattcgtgctactagctgtattggacgaaaacaacct
ccaaagactgataaggtcacctcatcttatcttatccggatacagaaaggaaagataatt
caaccttttggatgcttgcttgccctcgatgagaatacctttagggtgattgcctatagt
gagaatgcctcagaaatgctaacaatggttagtcatgtcgtaccaagtatagggaatcat
ccaatgattgggatcggaactgatgtaaggactatatttactgcaccaagtgcttctgca
ctgcagaaggctttagagtatcctgatgtttctcttttaaatccgatcttagttcatagc
aaagcttctggaatccctttctatgcgatcattcaccgggtaacaagcagcttagttatt
gactttgaacccgtgaagctatatgaagttccaatgacagtttcaggtgccctgcaatct
tacaagcttgcagccaaagcgattactcgtttgcaatctttgccaagtggaaatctcggc
agacttgtcgataccatggttcaggcggtctttgagttaaccggatatgacagggtaatg
gcatacaaatttcatgaagatgaccatggagaaattgtgtctgagattacaaagcctaac
ctcgacccatacctaggcttgcattatcctgcaactgatattccacaggctgcccgattc
ttgtttatgaagaataaggtccgtctgatatgtgattgccgtgcaaaaggtgtgcaggtg
attcaggatcaaattcatccatttgagttgactttatgtggttcaactctcagggcgcca
catggttgtcatgttcaatatatggagaatatgaactctataggatccttggtcatggct
gtcgttgttaatgacgaggatggagaaaacaacggagctattcctgctacgccccaacaa
aagaggaagagactatggggtttagttgtctgccaccacacatctccaaggtttgtccca
tttcctatgcgttacgcttgtgaatttctagctcaagtatttgccatccatgtgaataaa
gaactagtgttggaaaaccaattcctcgagaagaaaatcctcaaaactcaaactctcctc
tgtgatatgctgatgagggatgttcctttaggcatagtgacaaaaagtccaaacattatg
gatctcgtcaagtgcgatggcgctgtgcttttgtacagcgataagttatggaaacttggg
gtcaccccaacggatgaccaagttagagatatcgctttgtggctatccattcatcatgaa
aattctacaggactaagcactgatagtttgtataaagctggttatccgggagctcttact
cttggcggttctttttgtgggatggccgctgtaaaaatcacttcaaagaacatcgtattg
tggttccgttctcacactgctgcagagttaaaatgggccggtgagaaacatcggcccaat
gataaggatgatgaatcaaagatgcaccctagatcatcattcaaggtgttcctcgaggtt
gtgaagaataggagtgtaccttggaaggattttgagatggatgctatttattcattacag
cttattcttagaaatgctttcaaggatagggaagcagcagacgttaatacgtctataatc
aattctaaaatcagtgatcttaagattgatggcatcaaagagcttaaagcagttacccat
gagatggcgcgcttgattgaaacagccacagtccctattttcgccgttgactctggtgga
tttgttaatggttggaacaccaaaatttccgagctcactgggcttcctgtaataaaagct
gttggaaaacatatatcagaactagttgcagacacttcaattgatattttctggaatttg
ctgcacttagcattacaaggaaaagaggagactaatgttcagttcgagatcaaaaggcat
cattcggtggtagacagtcccgtcatcttagttgtgaatgcttgttcaagcaaggatgtc
aatggaaatgttatcggggcatgtttcattgctcaggatataactggtcagaaatcagtt
atggacaagttcacacgaattgaaggcgattataaagctatagtacataatccaacacct
ttgattccgccgatatttggaacagatgaatttgggtggtgttcggaatggaatcctgca
atgtcgaagttaacaggatatgagcgagaggatgtcattgataagatgttactaggggag
gtttttggtacccagaaagcatgttgtcgtcttaaaaatctcgagtcatttgtaaacctt
ggtgttgtacttaatggtgctttgagtggccaagataccgaaaaaattccaattggcttt
ttcactcgtaatgggaagttcattgaaaccctgatttgcgtaagcaaaaagttaaacaga
gacggtgcagtcactggtgtttttggcttcttgcagcttgctagtcaggattttcaggac
acatttcatgtacaacgactagctgagcaagctgctcttaagaggctaaaagcattggcc
tatatgaaaacacagataagaaatcctttgtcaggcattatgttctctagaaagatgctc
gagggtaccgacataggagaagagcaaaggttgctcttgcacacaagtgctcagtgccaa
cgacaacttaacaagatccttgaagattcagatttggatagcatcattgatgggaacatt
gagttagaaatggtggaattttctatccaagatatagtagtagcgtctatgagtcagata
atggcgaagagcaatgataaaggaattcggatagaaaacgagacatcagaagagttccta
aaggagactttgtgtggagatagcctaaggctccagcaagtcctggcagattttctgttt
gtttcagtaacttgtacacctgctggaggacaagttggaattaaagttggcttggtaaaa
tacaaggtagaggaatctgttctgctagcaaatttggagttcaggatattacacacaggc
ggagggataacagaagagttattaggacagatgttcgagagcaacaaagataatgcaaca
gaagagggtattagtctgctgataagcaggaaattagtgaagcaaatgaatggagatatc
cagtatttgagatctgctggatcttcaacgttcatcatatctgttaaacttgctgttgtc
gataaagctacacaatga
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