Amaranthus tricolor (tampala): 130821151
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Entry
130821151 CDS
T09367
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130821151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130821151
03012 Translation factors [BR:
atri03012
]
130821151
Enzymes [BR:
atri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130821151
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
130821151
Translation factors [BR:
atri03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
130821151
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
Dicer_dimer
nSTAND3
ATPase
NACHT
T2SSE
Motif
Other DBs
NCBI-GeneID:
130821151
NCBI-ProteinID:
XP_057542793
LinkDB
All DBs
Position
8:26366980..26384262
Genome browser
AA seq
1224 aa
AA seq
DB search
MKDRPQSSVYVPPHQRLRSLITVPPLNGSKYYHQGFTPIPSSSPNDGRNSPVNFSVQKNH
NQDTATGGDFQFNSKQETNVYGTAWDSNGNGDENLTFESFHYKFYTPPTNYALHVDRQHS
DSQRSSAVNTVSEVGSHRDFVEFEPSSYAFGCASVADNVEHWKQKLTMLLRDKDKQELLS
REKKDRRDFDQIATVANKMGLYSHSYVKVVVFSKSPLPNYRFDLDEKRPLREVSIDSNLQ
KRVDAHLAEYLSKKSKSANVLQDNGFSRSSSSGSITNDDGFFEQPEPLNLSSSVMERIIR
RRHLQLHDQQLAWQNCPEGRKMLEFRRSLPAYKERDALLTAIECNQVIIVSGETGCGKTT
QIPQFILESEIESSRGALCSIICTQPRRISALSVAERVAAERGEKLGESVGYKVRLEGIK
GRDTRLLFCTTGILLRRLLVDRTLKGVTHVIMDEIHERGMNEDFLLIVLKELLPRRPELK
LILMSATLDAELFSSYFSGAPLVNILGFTYPVQTHFLEDILEKSGYKLTPYNQIDDYGSD
RLWKMNKQGFRKRKSQIATVVEDALAAADFREYSSQTRESLSCWNPDSMGFNLIENLLCN
ICENEVAGAVLVFMTGWDDISSLKDKLQAHPILGDPSRVLLLACHSSMASSEQRLIFEKP
DTGVRKILLATNIAETSITIDDVVFVVDCGKAKETSYDALNNTPCLLPSWISKVSAQQRR
GRAGRVQPGECYHLYPRCVYDAFTEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQ
SPEPLAVRNAIEYLKVIGALDANENLTVLGRYLTLLPMEPKLGKMLVLGAIFNCLDPVLT
VVAGLSVRDPFLTPMDKKDLAEAAKAQFSHDNSDHLALVRAYDAWKSAEKEYGGYDYCWK
NFLSVQSMKAIDSLRREFYALLKGSGLVDDNQSSFNVWRHDDKLVRAVICYGLYPGICSV
VQNEKSLSLKTMEDGQVHLYSNSVNAREERIPYPWLVFNEKMKVNSIFLRDSTAVSDTVV
LLFGGNIVKGESDGHLKMLGGYLEFFMKPVLAETYLNLKRELENFIQLKLLNPRMDACAY
QDLRSAVRLLVSEDKCDGRFVFCRQNLKPTVTKTLVSPTVPALSSRTRSGPGGDNSKSQL
QTLVTRAGYTAPTYVVKQLSNSQFRATVEFNGMQIMGRPCNNKKNAEKDAAAEALDWLMN
GTQMGNEHVNHMSILLKKSKKSHN
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatcgaccgcaatcatctgtgtacgtgccgccgcaccagagactaaggtctctc
atcaccgttcctcctctcaatggctctaaatattatcatcagggtttcactccaatccct
agttctagtcctaatgatggaagaaatagtcctgttaatttctctgttcaaaagaatcat
aatcaagatactgcaactggtggggattttcagtttaattcaaagcaagagactaatgtt
tatggcactgcatgggattccaatgggaatggggatgagaatttgacttttgaaagcttc
cattacaagttttacaccccaccaacgaactacgccttacatgttgatcgtcaacatagt
gattctcagcgtagttctgctgtcaatacggtatctgaagtaggatctcaccgagatttt
gttgagtttgagccctcttcatatgcttttgggtgtgcttcagttgctgataatgtggag
cactggaaacaaaagttgaccatgcttctacgagacaaagataagcaagaattgctatcg
agggagaaaaaggatcgtcgtgactttgatcaaatagctactgttgcaaataagatgggt
ttgtatagtcattcatatgtcaaagtagttgtgtttagtaaaagtccgctgcctaattac
agatttgatcttgatgagaaacgtcccctaagagaggtttcgatagattcaaatttgcag
aaaagagtggatgcccatcttgctgagtacctttctaaaaaatctaaaagtgcaaatgtt
ttacaagataatgggttctcaagatcaagcagtagtggtagcattactaatgatgatggt
ttctttgagcaaccagaacctttgaatcttagcagttctgttatggaaagaattattagg
cgaaggcacttgcagcttcatgatcagcagcttgcttggcagaactgccctgaagggagg
aaaatgttggagtttcgcagaagccttcctgcgtataaggagagagatgcactgttgaca
gccattgaatgtaatcaggtcatcattgtctctggggaaacagggtgtggtaaaaccaca
caaataccacaattcattttggagtccgaaatagaatctagccgtggagctttgtgtagt
attatatgtactcagccaagacgaatatcagcattgtcagtggctgaaagggttgctgca
gagcgaggggagaaattgggagaatctgttggttataaagttcgactagaaggtataaaa
ggaagagatacgcggcttctgttttgtaccactggcatcttgttgaggagattgcttgtt
gacaggactttgaagggagtaactcatgttatcatggatgaaattcatgaacgtggcatg
aatgaagattttcttcttattgttcttaaagagctacttcctcgtagaccagagttaaag
ttgattttgatgagtgcaactttagatgctgagcttttctcgtcttattttagtggtgct
cccttggtcaacatcctgggattcacctaccctgttcaaactcatttcctagaagacata
ctggaaaagtctggatataaattgactccttacaatcagatagatgattatggttcagat
agattgtggaagatgaacaaacaaggcttcaggaaaagaaagagccaaattgcaactgtt
gttgaggatgcacttgctgctgctgacttcagagagtatagctcacagactagggagtct
ttatcttgttggaatccagattcaatgggctttaatctcatcgaaaatctattatgcaat
atttgtgaaaatgaagtggctggtgctgttttagttttcatgactggttgggatgacatt
agttcacttaaggataaactccaagctcatcccatcttgggagatccaagtagagtcttg
ttgcttgcttgtcatagttctatggcaagttcagaacagagattgatatttgagaaacca
gacactggtgtgcgcaaaattttgctggcgactaatattgcagagaccagtatcactatt
gatgatgtggtttttgttgttgactgtggtaaggcaaaggagacatcttatgacgcctta
aataatactccttgcttgcttccttcttggatttcgaaggtttctgctcaacagagaaga
ggaagggctggtcgtgttcaacccggagaatgttaccatctatatccaagatgtgtatat
gatgcctttactgagtatcagcttcctgaaatcctgaggacacctctgcagtcactctgt
ttgcagataaagagtttaaaacttggcagtatatctgaatttctgtcaagagctctacag
tcaccggaaccattggcggttcgaaatgctatagaatatttgaaggtcattggggctttg
gatgcaaatgaaaatctcaccgttttaggtcggtatctcacattgctaccaatggagcca
aaacttgggaagatgcttgtgttaggtgctattttcaattgtctggatcctgtgttgact
gttgttgctggccttagtgtaagagatccctttttaacacccatggataaaaaagatctt
gcagaagctgctaaagctcaattctcccatgataatagtgaccatttggcgcttgttcgt
gcttatgatgcgtggaagagtgccgagaaagagtatggtggctatgactactgctggaaa
aattttctctcagtacagtccatgaaagctattgactctcttcgaagagaattctatgct
ttgttaaagggtagtggactagttgatgataaccaatcttccttcaacgtatggagacat
gacgacaaacttgtccgtgcagttatatgttatgggttatatcctggaatctgttccgtt
gtgcaaaacgagaagtcattatcattaaagacaatggaggatgggcaggtgcacttgtat
tcgaattccgtcaatgctcgtgaggaaagaataccatatccatggcttgttttcaatgag
aaaatgaaagttaactcaattttcctccgtgattcgactgcagtgtcagacactgtggtt
ttattgtttggaggaaacattgtcaaaggggaatcggatgggcatctaaaaatgctggga
ggatacttggaatttttcatgaaacccgtgttggcagaaacatacttgaacctcaagaga
gaattggagaatttcatacagttgaaactcctaaatcctagaatggatgcatgtgcttat
caagaccttcggtctgctgtgaggctactagtttcggaggataaatgtgatggtcggttt
gtgttttgccgccagaatcttaagccaactgttactaaaactctggtctcacctacagtt
ccagcattgtcctctagaacgcgaagtggacctggtggcgataactcaaagagtcagctt
caaacgttagttactagggcggggtatactgctcctacttatgtagtgaagcaactgtcg
aatagtcagtttagagctaccgttgaatttaatggaatgcagatcatgggacgaccttgc
aacaacaagaagaatgcggagaaagatgcagctgccgaagctctagattggcttatgaat
gggacccagatgggtaatgaacatgttaatcacatgtcaatattgctgaaaaagagcaag
aagtctcacaactga
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