Amaranthus tricolor (tampala): 130821387
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Entry
130821387 CDS
T09367
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03030
DNA replication
atri03410
Base excision repair
atri03420
Nucleotide excision repair
atri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130821387
03410 Base excision repair
130821387
03420 Nucleotide excision repair
130821387
03430 Mismatch repair
130821387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atri03032
]
130821387
03400 DNA repair and recombination proteins [BR:
atri03400
]
130821387
DNA replication proteins [BR:
atri03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
130821387
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
130821387
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA_lid_RFC1
AAA
RCF1-5-like_lid
Rad17
PTCB-BRCT
AAA_22
AAA_30
AAA_5
BRCT_2
AAA_assoc_2
AAA_19
nSTAND3
Zeta_toxin
RuvB_N
DNAX_ATPase_lid
AAA_18
RsgA_GTPase
AAA_28
Gp44_lid
AAA_33
Motif
Other DBs
NCBI-GeneID:
130821387
NCBI-ProteinID:
XP_057543116
LinkDB
All DBs
Position
8:complement(24188704..24202469)
Genome browser
AA seq
978 aa
AA seq
DB search
MSDIRKWFMKKHDTGNDSAAKPSAMKPLPDKPPATTSHTPKPGGQESAARRKTSKYFDKD
QEKLKVETKKVEVPSKRKSEKGDEDSHIDIKPSPAKKVHKVKDVDDADDDFTPISSKKKS
VDTTPSKRQKGSSGSGVSKKNVVADEGDDEMDEDKETPTPVKSAGRGRGRGAPSGTSSGG
RGRGAGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLDGLTFVISGTLDSLEREEAEDLIK
RHGGRVTGSVSKKTNYLLCDEDIGGRKSAKAKELGTSFLTEDGLFNLIRASQKSKILASD
NSKKPYESTPSSAAKKTQQNVEVKKFGGISSSNKAPNSSVSSSPAKKKDISKKGASLTWA
EKYRPKTPNDIVGNQALVKRLHDWLSHWEEQFLHNKGKEKGKKQSDSAEKKAVLMSGTPG
IGKTTSAKLVSKMLGYETIEVNASDNRGKADSKIGKGISGSTANSVKELISNECLGGNLD
RSKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKVPIICICNDRYSQKLKSLVNYCSQ
YNFRKPTKQQIAKRLSQIANAEGLKVNEIALEELAERCNGDIRMAVNQLQYMSLSMSVIG
YDDIRQRFLGSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDLDLVPLLIQENYIN
YRPNSACKDDGGMKRMSSLARAAESIADGDIINVQIRRYRQWQLSQSSCISSCIIPASLM
HGQRETFLKGERNFNRFGGWLGKNSTMGKNLRILEDLHVHMVASNNSYLGRGTLRLDFLT
LLCKKLTEPLRALPKEEAVKQVVEFMDTYSLNMEDYETLMELSKYQGRPSPTDGILPAVK
AALTKAYKEGSNLRVVRTADMITLPGLKKAPKKRIAAILEPVDELGEETDDINEENEEEN
TEDTEELDDTDDVKNIKLDLESNHAKGVVVQLELKGAGSSGTKKAQKAPAGKGKGGAAEP
ASGKRGGRVSGTAAKRKR
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatattcggaaatggttcatgaagaaacatgatactggaaatgacagtgctgcc
aagccttccgcgatgaagcctttgcctgataaacctcctgccactacttcgcacacacca
aaaccgggaggtcaagaaagtgctgcgaggaggaaaacaagcaaatattttgataaagat
caagagaagttgaaggttgagaccaaaaaagtggaggtgccatccaaaagaaagtcagaa
aagggagatgaggattctcatattgatatcaaaccttcacctgcaaagaaggtccacaaa
gtaaaggatgtagatgatgctgatgacgactttactccaattagttcaaaaaagaagtct
gttgatactactcctagcaaaagacaaaagggaagttcaggaagtggtgtctccaagaaa
aatgtagttgctgatgaaggtgatgatgaaatggatgaggataaggagacaccaactcct
gtcaaatctgctggaaggggtcgtgggaggggagcaccatcaggcacttcgtctggtgga
agaggaaggggagctggtggacggggaggatttatgaactttggtgagaggaaagaccca
ccccacaaaggagaaaaggaagtccccgaaggtgccccagattgtttagatgggctgact
tttgttatttctgggacacttgacagcttggagagggaagaagctgaagatttaatcaaa
agacatggaggtcgcgtaactgggtctgttagcaagaaaacgaattatcttttgtgtgat
gaagatattgggggacggaagtctgctaaagcgaaagaattaggaacttcttttcttaca
gaggatggcttgtttaatttgatccgtgcatctcaaaaatcaaaaatccttgcttcagat
aattcaaagaaaccatatgaaagcactccatcatctgctgcaaagaaaactcagcagaat
gtggaagtgaagaaatttggagggatctcgtcttccaataaggctccaaattcatcagtt
agttcatcccctgcaaagaaaaaggatatctcaaagaaaggcgcttctttgacatgggca
gagaaatacagacccaaaactccaaatgatatagttggcaatcaggcacttgttaaacgt
cttcatgattggttgtcacattgggaagagcagtttctgcataataaaggaaaggagaag
gggaagaagcaaagtgattctgcagagaaaaaggcagtcttaatgagtgggactccaggt
atagggaaaactacctcagcaaagttagttagtaagatgctgggttatgagacaattgag
gtcaatgctagtgataatcgtggaaaagctgattctaaaattggcaaaggaattagtgga
agcactgcaaattccgtaaaggagcttattagtaatgaatgtcttggtggtaatctggat
aggtcaaagcacccaaagactgttctgattatggatgaggttgatggcatgtctgctggt
gacagaggtggggttgcggacttgattgctagcatcaagatatccaaagtcccaataatc
tgcatttgtaacgatcgttatagtcagaaactgaaaagtctagtaaactactgttcacaa
tataatttccggaagcctacaaaacagcagattgcaaagaggttgtcgcaaatcgcaaat
gcagaagggcttaaagtgaacgagattgctttggaagagctggcagagagatgtaatgga
gatatacgcatggctgtgaatcagctgcaatatatgagcttgtccatgtcagttattgga
tatgacgatataaggcagcgctttcttggcagcgccaaggacgaagacatttcacctttt
actgctgttgacaagctgtttggcttcaatggtgggaagttaaggatggatgaaagaatt
gacctgagtatgagtgaccttgatttggttccacttcttatccaggaaaattatataaat
tatcggccaaactctgcgtgtaaagatgatggtgggatgaaaagaatgagctctcttgcc
cgtgcagccgaatcaattgctgatggagatattattaatgtacaaataagaagatacagg
cagtggcagctctctcaaagtagctgtatttcctcctgcataataccggcctcattgatg
catggacagagggagacatttttgaagggtgaaagaaatttcaacaggtttggtgggtgg
cttggaaagaattcaacaatgggaaagaatctaaggattctagaggatcttcatgtccat
atggttgcatctaacaactcgtatttagggaggggaactttacgtcttgatttccttaca
cttctttgtaaaaagttgactgaaccacttcgggctcttcctaaggaggaagctgtaaaa
caagttgtagaatttatggatacttactcattgaatatggaggactatgagacgctaatg
gagctgtcgaaatatcagggacgtcctagtccaacagatggtatattgccagcagtaaaa
gctgctttaacaaaagcatataaagaaggtagcaatttacgcgtggtgcggacagctgac
atgatcacccttcctggattgaaaaaggctcctaagaagagaattgctgctatcttggag
ccggtcgatgaacttggtgaggaaactgatgatatcaacgaggaaaatgaagaagagaat
actgaagatactgaagagctcgatgatactgatgatgtgaagaacatcaagttggatctc
gagagcaaccatgcaaaaggggttgtggtacaattggaactgaaaggtgctggaagttca
ggcaccaaaaaggcgcaaaaggctccagcagggaaaggcaagggaggtgctgctgagccc
gcatcagggaagagaggcgggcgtgtgtcaggaactgctgccaagaggaagagatga
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