Amaranthus tricolor (tampala): 130821747
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Entry
130821747 CDS
T09367
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
130821747
Enzymes [BR:
atri01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
130821747
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
PMD
DUF1985
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
130821747
NCBI-ProteinID:
XP_057543513
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All DBs
Position
8:27546749..27563576
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AA seq
934 aa
AA seq
DB search
MVVYVNLYLPLLKCKLFECRLKTKMAVYRGKMPIIKSKDEDVRQSQPLISSYGSKYGSHI
REPRKSHDSQRLSPNVNPPVTLNLNDQYAILDNGLVKVSLSIPGGDVAAIEYDGMKNVLD
TTHKQTTRGYWDIFWTTENTNGQDWLHMENFKVIIQNDDQVELSFSTQWKGDSNSIPLNI
DNRFVMLRGSSGLYNYLTLDHQQSFPATNLSQIRVAYRLQPDKFHYMVITDDIQKAMPTN
QDIQNGQPLAYKEAVLWTNQTDSEQKTAVEDKYQYSQDMKDQQVHGWISSPSDDDTRAGF
WLIKPSTEFYSAGPFKQELTSHLGPISLIDFFSGHYVGEFMQISLGDGESWQKAVGPYFV
YLNKASDSEDTHEHLWNDAKNQLKQETDKWPYDFIASEFLVKSNQRGCVKGQLSIRDEHM
SSDLIPASSAWVGLAAPGEAGSWQTETKGYQFWVQADDNGNFVIKNIHEGEYSLFSWVSG
VIGEYKHDANIRVQAGDQISLDKIVYEAPRNGPTLWEIGIPDRTAAEFFVPDPRPEYINP
VFINSTKNRYRQYGLWDRYTEIYPTNDLVYTIGVSKYTKDWFYAHVPRRIDTNKYEAATW
QIQFPIQDLIPSFRSYTLRLSLASASNAHIQVRYGRFNNADTSSRPHFATHKIGSDNAIA
RHGIHGLYWEFSFDISSSWLQNGMNTLYLTQPIVANPFCAVLYDYIRLEGNCKSRRFFRI
LYFFSIPYDTCDLHEQEMDLAAPGPLDPSVLTMQHEHRITPLWDAQVSDAETLGTRLPDS
VPWVIDDRIIPYLELARLYDFHLVAYDRVDRTIITALVERWRQETHTFHLPLAGRQLSRW
RDMVHRILGECPPPKVIKGSGLRCTWLVQTFSHLLEDADEGTISRYTKAYLLYLIGAMLF
ADKTNNQIQLLYLTLLDDPWECIAEYSWGSAALG
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggttgtctatgtgaacttatacttaccattactaaaatgtaagctttttgaatgccga
ttaaagacaaaaatggctgtttataggggaaaaatgccgattataaaaagcaaagatgaa
gacgtgcgtcaatctcagccattaatctcatcttacggctcaaaatatggttctcatata
agggaaccaaggaaaagtcatgatagtcaaagattgtcaccaaatgtcaaccctccagtt
accttgaatttgaatgaccaatatgcaatcttagataatgggctagtgaaagtaagtttg
tcaatacctggaggtgatgtggctgcaattgagtatgatggaatgaagaatgtccttgat
actactcacaaacaaactactagagggtactgggacattttttggacaacagaaaatacc
aacggacaagactggctacatatggaaaattttaaagtgattatacaaaatgatgatcaa
gtagagctttccttttcaacacaatggaaaggagattcaaattcaattcctctcaacata
gacaacaggtttgtaatgcttcgaggctcgtctgggttatacaactatctcacattagat
catcaacaaagttttcctgctaccaatctttctcaaataagagttgcctatagacttcaa
ccagataagttccattacatggttattacagacgatatccaaaaggccatgccgactaat
caggatatacagaatggtcagcctcttgcgtataaagaagccgttctatggacaaatcaa
actgattctgaacaaaaaaccgcggttgaagataagtatcaatactcgcaagatatgaaa
gatcaacaagtacatggatggatttctagtccttctgatgatgatactcgagctgggttt
tggttgattaagccaagtactgagttttattcggctgggcctttcaaacaagagctcact
tctcatttgggacctattagccttattgacttcttttctggtcattatgttggtgagttc
atgcaaatatcacttggagatggagagtcttggcaaaaggcagtgggcccttattttgtc
tatttgaacaaagcttctgattcagaggatactcatgaacacctttggaatgatgcaaaa
aatcagttgaaacaagaaaccgataagtggccttacgactttatcgcatcagaattttta
gtgaaatctaatcaacgaggatgtgttaaggggcaattgtcgattcgagatgaacacatg
agtagtgacttgattcccgcgagttctgcttgggtcgggttagctgcacccggtgaagca
ggctcatggcaaacggaaacaaagggctatcagttttgggttcaggcggacgataatgga
aatttcgtgatcaagaacatacatgaaggggaatatagtttgttttcatgggtttctggt
gtcataggagagtataaacatgacgcaaacatcagagttcaagcaggtgatcagatcagt
ttagataagatcgtttacgaggcaccacgaaacgggcctacgctttgggaaatcgggatt
cctgatcggacagcagctgagtttttcgtgcctgatccaagacccgaatatattaaccct
gtatttatcaatagcacgaagaataggtacagacaatacggattatgggatagatacact
gaaatttatcctactaatgaccttgtttacacaattggtgttagcaaatatacaaaagat
tggttctatgctcatgtaccaaggcgcatagatacgaataaatatgaagcagcaacatgg
caaattcaattcccaattcaagatttgattccatcatttcgaagttacacattaagacta
tcattagcttctgcatcaaatgctcatatacaggtacgttacggacgttttaataatgcg
gacacgtcatcaagaccacattttgcaacgcacaagataggatctgataacgctattgca
agacatgggatacatggcttatattgggaatttagctttgatatatcaagttcatggctt
caaaatggaatgaacacattatatttgacacaaccaattgtggcaaatcccttttgtgct
gttttgtatgattatatacgtttagagggaaactgtaaatcccgtcgtttcttccgcata
ttgtactttttctcaatcccctacgatacttgtgatttgcatgagcaggagatggatcta
gcagctccaggacccctagatcctagtgtgttgactatgcagcatgagcacaggattact
cctctttgggatgcccaggtgtccgatgcagaaacgctaggcaccaggcttccagattcc
gttccatgggtgatcgatgataggatcatcccgtacttagagctagcgaggttatacgac
tttcaccttgttgcatacgacagagttgaccgtaccattatcacagcactggtcgagaga
tggcgtcaggagacgcatacatttcatctacctctagccggacgtcagctatcacgctgg
cgtgacatggtgcatcgcatattgggagagtgccctccaccgaaagtgattaaggggagc
ggtttgcgctgcacgtggttagttcagaccttctcgcatctcctcgaagatgctgatgaa
ggcaccatttcgaggtacaccaaggcgtacctcttatacttgataggagctatgttgttt
gccgataaaacaaacaaccaaatacagctcctttacttaactttacttgacgacccgtgg
gagtgcatcgccgagtatagttggggctccgcagcccttggataa
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