Amaranthus tricolor (tampala): 130821776
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Entry
130821776 CDS
T09367
Name
(RefSeq) polygalacturonase QRT2-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri00040
Pentose and glucuronate interconversions
atri01100
Metabolic pathways
Module
atri_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
130821776
Enzymes [BR:
atri01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
130821776
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
NosD
Motif
Other DBs
NCBI-GeneID:
130821776
NCBI-ProteinID:
XP_057543537
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Position
8:complement(29689833..29695951)
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AA seq
467 aa
AA seq
DB search
MSLKSHFFMLGIFCSLIFTTYPSNYPFLKPDHLFRSYMISYYSMNDNSKSRYYYDYELDP
QKLVNYDRMILERIRQHSHLHRAIAPSPQPHKIINIDHFVRSGHRRKDHTKAFMKAWKVA
CAKGGVLLVPQDKTYRVRPIKFSGPCHSQLIFKIKGTIEASTRISDYRDRRLWLVFANLH
NFKVEGGGIIDGMGQVWWKNSCKINKTKSCQHAPTAVTFVGCKNFMLDGLKITNAQQMHL
TFQRCNAVRASNIFIKAPANSPNTDGIHITETRNIRLTRSLIRTGDDCISIVSGSKNVHI
SEITCGPGHGISIGSLGKGNSKAIVSNVLVNNTRLCGTQNGVRIKTWQGGQGYVKNVVFQ
NITMRNVSNPIIIDQHYCDQKTPCSEKEWAVQVSNVVYESIKGTSFTEAAIKFDCSKSHQ
CHRILLHNIDLVLEKGHKSASALARADCKNVELYNRGKVAPRCFHET
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtctctaaaatcccattttttcatgttgggtattttttgttcattaatttttacaaca
tatccatctaattatccctttttaaaacctgatcatttatttagaagctacatgataagt
tattattctatgaatgacaatagtaagagtcgttattactacgactacgagttagatcca
caaaagttggtcaactatgataggatgattctggaacgcataaggcagcattcacatcta
catagagccattgctccttcacctcaacctcacaaaatcatcaatatcgaccattttgtt
agatcagggcaccgaaggaaagatcacaccaaggcttttatgaaagcttggaaggtagct
tgtgcaaagggaggggttttgctagtgcctcaagacaaaacatatagggtcaggccaatc
aagttctctggaccttgtcattctcaactaatattcaagatcaaaggaacaatcgaggca
tctacaaggatatcagattatagagatcgacgactatggttagtatttgcaaatttacac
aattttaaggtagaaggtggaggtattattgatggaatgggccaagtttggtggaagaat
tcttgcaagatcaacaaaaccaagtcgtgtcaacatgcacctacggctgtaacctttgtt
gggtgcaagaacttcatgttggatggattaaagataacgaatgcacaacaaatgcaccta
accttccagagatgtaatgctgtaagagcttccaatattttcattaaagcaccagcaaat
agccccaacactgatggaattcatattactgagactcgaaatattcgacttacaagatct
ttgattagaactggggatgattgcatatcaatagtaagtggatcaaaaaatgttcatata
tctgaaataacatgtggaccgggccatggaatcagtattggaagcttaggcaagggaaat
tccaaggccatagtttcaaacgtattggtaaacaatacaagactttgtggaactcaaaat
ggagtgagaataaagacttggcagggaggacaagggtatgtaaaaaatgttgtgtttcaa
aatataacaatgcgtaacgttagcaatccaatcattattgatcaacattattgcgatcaa
aaaacaccgtgttcagaaaaggaatgggcagttcaggtaagcaatgtggtgtatgagagc
atcaagggaacgagttttacagaagcagccataaaatttgattgcagcaaaagccatcaa
tgccatagaattttgctgcataatatagacttagtacttgaaaaaggacataaatcagca
tcggcattagctagggctgactgcaaaaatgttgaactatacaataggggaaaagttgca
cctagatgctttcatgaaacttag
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