Amaranthus tricolor (tampala): 130823908
Help
Entry
130823908 CDS
T09367
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri04120
Ubiquitin mediated proteolysis
atri04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130823908
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
130823908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
atri04121
]
130823908
Enzymes [BR:
atri01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130823908
Ubiquitin system [BR:
atri04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130823908
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
130823908
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
WD40
Beta-prop_EML_2
WDR55
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
Beta-prop_HPS5
EIF3I
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF4
zf-C3HC4_2
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
zf-C3HC4
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WD40_like
zf-C3HC4_3
WD40_RFWD3
zf-RING_2
zf-RING_UBOX
Beta-prop_WDR75_1st
U-box
Beta-prop_DCAF12
DUF1664
Beta-prop_WDR35_TULP_N
Clathrin
zf-C3HC4_4
DUF4175
Motif
Other DBs
NCBI-GeneID:
130823908
NCBI-ProteinID:
XP_057544719
LinkDB
All DBs
Position
9:27901196..27912657
Genome browser
AA seq
733 aa
AA seq
DB search
MTNHPPYLRGLLPPSYPISLSKISNFFLLSHVNLQSSLTLSSLKNLEEISTMAESSIGGG
GGGGGGALVPSMKTDSPLETSSGDGGESIACDKDFLCPICMQIIKDAFLTACGHSYCYMC
IFTHLRNKCNCPCCGRFLTPKLIFPNFALDKILKKMSNHQFAKNASSSDQIRRALQQGCD
VSVKDLDCLLSLLAEKKRKMEQEEAETNLQLLLEFLVSLRKRKLEELSQIQNDLQYIKED
IDAVQKYTRDLWNVNKSCTARLSLREDDLDITGICPIAPRSLAGGSATQQVMLSGLLCGG
DSVSGRCSKETLENDFRAGLELYQLAPTERFKARKRQVETQFSDLQECYLQKRRHWDKQK
QAAERDLSNKNSFGYHEGLEDFKSVLTSCTRYSQLKVVSELRLGNVFHSANIISSIEFDR
DHDLFATAGVSKRIKVFEFSSVVDEPAEVHCAVVDIATRSKLSCLSWNTYTKNFIASSDY
EGIVTVWDVSTRQSVGEYEEHDKRAWSVDFSRTQPSLLVSGGDDCKGCVTTYMTTRTEAS
TAMVVVKIWCTKQERSVLNIDMNANICSVKCNPGSSMHVAVGSADHNIHYYDLRNISQPI
HVFSGHRKAVSYVKFLSSTELASASTDSSLRLWDVKENKLLQIYRGHVNEKNFVGLTANS
EYLSCGSETNEVFVYHKAISKPVARYKFNTSEFNNADHDRGSYFISSVCWKTDSPVIMAA
NSQGNVKILSLAA
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaccacccgccatatttacgtggtctccttccaccctcatatcctatttctctc
tctaaaatttccaatttttttcttctatcgcacgtcaatcttcaatcctctctcactctc
tcttcactcaaaaaccttgaagaaatctctacaatggcggaatcttccattggtggtggt
ggtggtggtggaggaggagctcttgttccttcaatgaaaactgattctccgcttgaaact
tcatctggtgatggtggtgaatcaattgcctgcgataaggattttctatgtccgatttgc
atgcagattattaaagatgcttttctaactgcttgtggacatagctattgttacatgtgt
attttcactcatcttcgtaataaatgcaattgcccttgctgtggtcgttttctcactcct
aagcttattttccctaatttcgctctcgataagattttgaaaaagatgtccaatcatcag
tttgcaaaaaatgcctcttcaagtgatcaaattcgccgagcactgcagcagggctgtgat
gtgtctgtgaaggatcttgattgccttttgtcactactagcagaaaaaaagagaaagatg
gagcaagaggaagctgagacaaatttgcaacttcttctcgagtttttggtgtctttgagg
aaaagaaaattagaagagcttagtcagatacaaaatgatctccagtacatcaaagaggat
atagatgctgttcaaaaatacacaagagatctgtggaatgtaaataagagttgtacagcc
agattgagtttgagagaggatgatttagatataacaggcatttgtccaatagcaccgagg
tccttggccggtggttctgctacacagcaagtcatgttatcaggtctactatgtggagga
gacagtgtgagtggtcgatgttctaaagaaactttagaaaatgattttcgtgctggcctt
gaattgtatcagctggctccaacagaaagatttaaagcaaggaaaaggcaggttgagact
cagttcagtgacctgcaagagtgttacttgcaaaaaaggaggcactgggacaaacaaaaa
caagctgcagaaagggatctgagtaataagaatagctttgggtaccatgaaggacttgag
gatttcaagtctgtgctgacttcttgtactcgatacagccaattgaaggttgtttcagag
ttgaggcttggcaatgtttttcactcagccaatattatatccagcattgaatttgacaga
gatcatgatttgtttgcaactgctggtgtctccaagaggattaaagtttttgagttttcc
tctgtggttgatgaaccagcagaagttcactgcgctgttgttgacattgctacacgatcc
aagctaagttgtttaagttggaatacgtacaccaaaaatttcattgcaagcagtgactac
gagggcattgttactgtttgggatgtttctactcgtcagagtgttggagaatatgaggag
catgacaaacgggcttggagtgtggatttttctcgtactcaaccttcactgctggtatcc
ggcggtgatgactgcaaggggtgtgtgactacatatatgaccaccaggacagaggcatca
acagcaatggtggtggttaaaatctggtgcaccaaacaggaaaggagtgttcttaatatt
gacatgaacgcaaatatttgttctgtgaagtgtaatcctggatctagcatgcatgtggct
gtgggctctgctgatcataatatacactattatgacttaagaaacattagtcagcctatc
catgtcttctctgggcatagaaaagctgtttcttacgtcaaattcttgtcctctaccgag
ctggcctctgcatcaactgatagctcattgcgcttgtgggatgtcaaggaaaataagctg
cttcagatttatagaggccatgtgaacgagaagaattttgtcggcctcacagcaaatagt
gaatacctttcttgtggtagtgaaacaaacgaggtctttgtttatcacaaggctatctct
aagcctgtcgctcggtacaagttcaatacttcagaatttaacaatgctgatcatgataga
gggtcgtacttcattagttcggtgtgttggaagactgatagcccagtgattatggccgct
aacagtcaaggaaatgtcaaaatactttctcttgctgcatga
DBGET
integrated database retrieval system
