Amaranthus tricolor (tampala): 130824131
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Entry
130824131 CDS
T09367
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
130824131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130824131
04121 Ubiquitin system [BR:
atri04121
]
130824131
03036 Chromosome and associated proteins [BR:
atri03036
]
130824131
03400 DNA repair and recombination proteins [BR:
atri03400
]
130824131
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
130824131
Ubiquitin system [BR:
atri04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
130824131
Chromosome and associated proteins [BR:
atri03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
130824131
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
130824131
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4_2
zf-RING_2
zf-RING_UBOX
zf-C3HC4
zf-HC5HC2H_2
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
zf-RING_6
zf-RING_10
PTCB-BRCT
PHD_NSD
zf-Nse
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
130824131
NCBI-ProteinID:
XP_057545002
LinkDB
All DBs
Position
9:complement(25988386..25998252)
Genome browser
AA seq
957 aa
AA seq
DB search
MADTSHLEKMGRELKCPICLSLFDSAASLTCNHVFCNSCIRKSMRSGSSCPVCKVPYQHR
EIRPAPHMDNLVNIYKSMEVASGLNLFVSQNGPSTKLAEMQTGQTTPEVVKFQKMKGASP
TSSKPKSKSSGRDRRKSSFPTNKRVQVPQSPDTETPLRQEKDIIDQNKLVKKNCSAFHSE
HPLSTVKENQHMSPFFWVREEDERSSQQTDMDQLTCTPAKVPSFSDLKDSDDDKSPEIST
EEKMHSKRNVDFFDSEMFEWTQRACSPELCSSPFKKQVQDTEGDEMLGQKLEGVSIDGTA
NKELNIEQQGNVSSQEKNNITNDELHNYAHPEKSEDSLNRRQIPHKRGKKLCKTNKHKGR
KHKEVGEGHDDQITPGNEIVSGSSEVAVTSKTKLVQSLYAKLMDEVLDHAVTDLPSASGS
KKGINKSKKLEVTKRSFSSIDHIHKQVSVKRKKQIKNLAQPHITREQSNLSIEMMLEEPC
RTVNESNGCIPSHKSKEIGQLAPVLKQKLSLNDIITEKVDERVENFHPRAAAQDKSSSVK
ERSNNGNPGTSPENGKIQHRKDLPALRKCDTISIKCAFCHSTTESEDSGEMIHYSEGRPV
AASHAGGLVIHSHKHCTEWAPNVYFEENIAVNLEQELTRSRKIKCSLCGVKGAALGCYEK
SCRKSFHVPCAKKLKECRWDTDHFVILCPHHASSKLPCELMMPQARKRKCNPKWSQRPQV
AATNIKKWNCCRSSEKIVLCCSALVATEKEAVSELAKSSGAVLSASWNPSVTHVIASTNE
KGACKRTLKVMMGILEGKWILSIKWVQECNKAMKLVDETPYEITCDIHGVQNGPCLGRLR
LLNKQPKLFAGFNFYFSGDFEPSYKGYLQDLVTAAGGTVLHRKPIVKTQGIKTPSSSPST
VIIYSIELPANCDLRKEDMILDHRRSDAEALAIASGAKLGNNSWLLNSIAGHKLQDL
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atggcggatacatctcatctcgagaagatgggaagagagcttaaatgtcccatctgtttg
agcttatttgattctgccgcatctcttacatgcaatcatgttttctgcaattcatgtatt
cgcaaatcgatgagatcaggttccagctgtccagtttgtaaagtgccttatcagcatcga
gaaattcgccctgctcctcatatggataatctagttaacatatacaagagcatggaagtt
gcttcagggcttaacctctttgtctctcaaaatggtccctcaaccaaattggcagaaatg
cagactggacaaacaactcctgaggttgtgaagtttcaaaaaatgaaaggtgcaagccct
acatcatcaaaaccaaaatcaaaaagttctggtcgcgacagaagaaaatcttcatttccc
acaaataaaagggtccaagtgcctcagtctccagacactgaaactccattaaggcaagaa
aaagatataattgatcaaaacaagttggtcaagaaaaattgttcagcttttcatagtgaa
catccactttcaactgtgaaggaaaaccaacacatgtcacctttcttctgggtgcgagaa
gaagacgaaagatcaagtcaacagactgatatggatcagttgacatgtaccccagcaaaa
gtcccttcttttagtgatctaaaagattcagatgatgataaatcccctgaaatatccacg
gaagagaaaatgcacagcaagcgcaatgtagatttctttgacagcgaaatgtttgaatgg
acacaaagagcatgctctcccgaactttgttccagcccctttaaaaagcaggttcaagat
acagaaggtgatgagatgcttggacagaaactggaaggagtctcgatcgacggcactgcc
aataaagaattgaacatagaacagcagggaaatgtcagttcccaagaaaagaataatatc
acaaatgatgagcttcacaattatgcccatcctgaaaaaagtgaagatagcttaaataga
cgtcaaatacctcacaagaggggcaaaaaactatgcaagacaaataaacacaaaggccga
aagcacaaggaggtaggagagggccacgatgatcaaataacgcctggtaatgaaattgtt
tcagggagttcagaagtagctgttacttctaagactaaacttgttcaatcgctttatgca
aagttgatggatgaagttctcgatcatgctgttaccgacctcccttctgcttcagggagt
aaaaaaggtattaacaaaagcaagaaacttgaagtgacaaagcggagctttagcagcatt
gatcacatacacaaacaagtctcagtaaaaaggaagaagcagataaagaatcttgcccag
cctcatatcaccagagaacaatccaatttatctattgaaatgatgcttgaagaaccttgc
agaactgtaaatgaatctaatggttgcatccccagtcataaatcaaaggaaattggtcag
ttagcacctgtgctcaaacaaaaactttctctaaatgatataattacagaaaaggttgat
gagcgagttgaaaattttcatccaagggccgcagcacaagataaatcgagtagtgttaaa
gagagatctaataatggtaatccaggaacttcccctgaaaacggaaaaatccaacaccgc
aaagacttgccagctttgcgcaaatgtgacacaatttccatcaagtgtgccttttgtcac
tcaactacagagagtgaggattctggggagatgatacactattctgaaggtagaccagtt
gcagcaagtcatgctgggggtttagtcatccattcacacaaacactgcactgaatgggcc
cctaatgtttactttgaagagaacatcgcggttaaccttgagcaagaattaacaagaagc
cgtaagattaagtgctctttgtgtggggtgaaaggagcagctctgggttgttatgagaag
agttgtcgcaaaagctttcatgtcccttgtgccaagaagctaaaagagtgtcgttgggat
actgatcactttgtcatattatgtcctcatcatgcttcttcaaaattaccctgtgaattg
atgatgccacaagctagaaaacgaaaatgtaatccgaagtggagccaaagacctcaagtt
gcagctactaatataaagaagtggaattgttgtcggtcatctgagaaaatagtcctctgt
tgttcagctcttgttgccacagagaaggaagctgtttctgaattagcaaagtcctcagga
gctgtgctatcggcaagctggaatccaagtgtcacccatgttatcgcatcgacgaatgag
aaaggagcatgtaagagaacacttaaagttatgatggggatcctagaaggaaaatggata
ttaagtatcaaatgggttcaagagtgtaataaggccatgaaactagttgatgagactcct
tatgaaatcacttgtgacattcacggggttcagaatggcccttgtttaggaagactaaga
cttctgaataagcaaccaaagctctttgctggattcaatttctatttctctggagatttc
gaaccttcatacaaaggctatttacaagaccttgtgactgctgctggaggaactgtacta
cacaggaagccaatcgtaaaaactcaaggaatcaaaacaccttcgtcctcaccatcaacc
gtcataatctacagcattgagctgcctgctaactgtgatctccgaaaggaagatatgatt
cttgatcacaggcgatctgacgcagaagctcttgcaattgcaagtggagcaaaactcggc
aacaattcatggctcctgaactccatagctgggcataagctacaagatttgtga
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