Amaranthus tricolor (tampala): 130824386
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Entry
130824386 CDS
T09367
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
130824386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130824386
03009 Ribosome biogenesis [BR:
atri03009
]
130824386
04131 Membrane trafficking [BR:
atri04131
]
130824386
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
atri04147
]
130824386
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
130824386
Ribosome biogenesis [BR:
atri03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
130824386
Membrane trafficking [BR:
atri04131
]
SNARE
SNARE associated proteins
Others
130824386
Autophagy
Aggrephagy
Other aggrephagy associated proteins
130824386
Exosome [BR:
atri04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
130824386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
CDC48_2
AAA_5
AAA_22
AAA_33
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_17
AAA_28
Mg_chelatase
ATPase_2
AAA_18
Parvo_NS1
IstB_IS21
ABC_tran
Viral_helicase1
AAA_7
NACHT
Vps4_C
AAA_lid_PRS2_C
NB-ARC
DUF815
TsaE
AAA_24
Zeta_toxin
Molydop_binding
Zot
Motif
Other DBs
NCBI-GeneID:
130824386
NCBI-ProteinID:
XP_057545353
LinkDB
All DBs
Position
9:25335918..25343366
Genome browser
AA seq
804 aa
AA seq
DB search
MADKAESSDKGGAKRDYSTAILERKKAPNRLVVDEAVNDDNSVVSMHPDTMEKLQLFRGD
TVLIKGKKRKDTICIALAEETCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVKKGDFFLVRGGMRSVEFKVIETDPAEYCV
VAPDTEIYCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEIGRLEIIRIHTKNMKLSDDVDLERISKETHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGQSNPSALRETVVEVPNVSW
DDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYSI
FKAALRKSPIAKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKEKRRSEN
PEAMEEDVEDDVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFNT
SSGTTGTDAFAASAGEADEDDLYN
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggcggataaggcggaatcttctgacaaaggcggcgcaaaacgagattacagtactgcg
attttggaacggaagaaggctcccaatcgattggttgtcgatgaagctgtcaatgatgac
aattcagttgtttctatgcaccctgacaccatggaaaaactccagcttttccgtggtgat
actgttctaattaagggaaagaaaaggaaagacaccatctgtattgcccttgccgaagag
acatgtgaagaacctaagattaggatgaacaaagtggtcaggtctaatttgagggtgcga
cttggtgatgtggtttccgttcaccaatgtcctgatgtcaaatatgggaagcgtgttcat
attcttcctattgatgatactattgaaggtgtcaccggaaatttgtttgatgcttacctc
aaaccttattttcttgaagcctatcggcctgtgaaaaaaggcgacttttttcttgtgaga
ggaggaatgagaagtgttgaatttaaggttattgagaccgatccagctgaatattgtgtg
gttgcccctgatactgagatttattgtgagggtgaacctgttaaacgagaggatgagaat
agattagatgaggttggctatgatgacgttggtggcgttaggaaacagatggctcagatt
agggagctggttgaattgcccttgagacaccctcagttgttcaaatctattggtgtcaag
ccacccaagggaattttgctctatggacctcctgggtcaggtaagacattgatagcccga
gctgtagcaaatgaaactggtgcattcttcttttgtatcaatgggccagaaatcatgtca
aaattggctggggaaagtgaaagcaatctcaggaaggcttttgaagaagctgagaagaat
gctccatctatcatatttattgatgaaatagattcgatagctccaaagagagaaaaaacc
aatggagaggttgaaaggcgtattgtttcacagctcttgactcttatggatgggcttaaa
tctcgggcccatgttattgttatgggcgctactaaccgtcccaacagcattgaccctgca
ttgagaaggtttggtcgatttgacagagaaatcgatattggtgttccagatgaaatcggg
agacttgaaattatccgcattcacacaaaaaatatgaagctttctgatgatgtggatttg
gagagaatttccaaggagacccatggctatgttggtgctgaccttgctgccttatgtaca
gaagctgcacttcagtgtattagagagaagatggatgtaattgatcttgaagatgagact
attgatgcggagatccttaattctatggctgttacaaatgaacacttccagactgctctt
gggcagagcaacccatctgctttacgtgaaacggttgtggaagttcccaacgtctcttgg
gatgacattggtggccttgaaaatgtcaaaagggagcttcaagagactgttcaatatcct
gttgagcatccggaaaaattcgaaaaatttgggatgtctccttccaagggagttcttttc
tatgggcctcctggatgtggaaagacgctgttggcaaaggctattgctaatgagtgtcag
gctaacttcatcagcgtgaaaggaccagagttgctaacaatgtggtttggagagagtgag
gctaatgttcgagagatttttgacaaggcccgtcaatcagcaccttgtgttctattcttt
gacgagcttgattcaattgcaactcagaggggaagtagtgtaggtgatgcaggtggtgcc
gctgacagagttttgaaccagcttttgactgaaatggacggcatgtctgccaagaagact
gtttttatcattggagccactaatagaccggatattattgaccctgctcttctaagacca
ggtcgccttgatcaacttatttacattcctcttccagatgaggagtcccggtattccata
tttaaggctgccttgaggaagtcacctattgccaaagatgttgatcttagagcacttgcc
aagtatacccagggatttagtggcgcagatatcactgaaatatgtcagcgtgcctgcaaa
tatgccattagagaaaacattgagaaggatattgaaaaagagaagagaagaagtgaaaac
ccagaggccatggaggaggatgtcgaggatgatgttgctgaaatcaaggcagcacatttc
gaagaatcaatgaagtttgcccgaagaagtgtgagtgatgctgatattcgtaagtatcag
gcatttgctcagaccttgcagcagtctagagggtttggtaccgagtttcgtttcaatacc
tcttccgggactacgggtactgatgcttttgctgcttctgctggtgaagccgatgaagat
gacctctataactag
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