Amaranthus tricolor (tampala): 130824401
Help
Entry
130824401 CDS
T09367
Name
(RefSeq) protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130824401
Transcription machinery [BR:
atri03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
130824401
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_8
TPR_16
TPR_19
TPR_14
TPR_17
TPR_11
TPR_6
TPR_7
TPR_CcmH_CycH
TPR_9
TPR_10
ARM_TT21_C
ANAPC3
ARM_TT21_5th
TPR_Slam
PknG_TPR
RPN7
Fis1_TPR_C
T7SS_EccA1_N
BACOVA_00961-like
Tcf25
Motif
Other DBs
NCBI-GeneID:
130824401
NCBI-ProteinID:
XP_057545383
LinkDB
All DBs
Position
9:complement(24059232..24082427)
Genome browser
AA seq
1082 aa
AA seq
DB search
MACVYIPVQGSEEEVRVSLDQLPRDATDILDILKAEQAPLDLWLIIAREYFKQGKIEQFR
QILEEGSSPEINEYYAEVRYERIAILNALGAYYSYLGKIETNPKEKDNHFTSATQYYNKA
SRIDMHESSTWVGKGQLLLAKGDVEQAFNTFKIVLDGDPDNVPALLGQASVQFNRGRYSE
SLELYKRALRVYPDCPGAVRLGIGLCRYKLGQFEKARQAFERVMQLDPENVEALVALGVL
DLHANDAVGIRRGMERMLLAFEIYPYNALSLNYLANHFFFTGQHFLVEQLTETALAVTNH
GPTKAHSYYNLARSYHSKGDYEKAGRYYMASVKESSKPQEFVLPFYGLGQVQLKLGDYRS
ALSSFEKVLEVYPENCETLKALGHIYAILQHTDKALEVLRKVTRIEPRDAQAFLDLGEIL
ISSDSGAALDAYRTARSLLKKGGEDIPIELLNNIGVLHFERGEFELAEQTFKDALGSGVW
LSLINGKENNYVTDAVTALLQYKDVQMFRHLQEEGNSVELPWNKVSSIFNLARLFEEVHK
TQSAILLYRLILYKYPEYVDALLRLAAIAKARSNIQLSIELVGEALRVNDKCPSALAVLG
CLELKNDEWVKAKETFRAASEAADGKDFYASVCLGNWNYFAALVSELKKQVKHIPVHLEK
AKEIYSNVLKKCTANLYAANGLGMILAEKGQFDVSKEIFTQVQEAGSGTIFCQMPDVWIN
LAHVYFAQGNHTLALKMYQNCLRKFFYNTESQLLLYLARTYYEAEQWQDSKRALLRAMHL
SPSNYTLRFNIGVVMQKFSASLLNKEKRSADEMRTTVSELEIAISVFGQLAMAFHENIHG
IDEKKIETHVSYCKHLLDVAKVYREAAELEEQQSRQKLELARQVTLAEEARRKAEEQQRL
QMEKRKQEEELRRVKEMEERFQRVKEQLKIGQPKRKERAQSEDEDGEHGDKKRRKGGKKK
RRDKKHHETEEVEVDRVEYQEDFDERNNEYEDPTNQFNAAYDDGEENVQDPLAAVGLEDS
DAEDDMVAPTTANRRRQAWAESDDDEPVYRPEDSSPLRENTAHEQEAGVIRDDVNEADDG
VD
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atggcgtgcgtttatattccggtgcagggctctgaggaagaagttcgagtttctctcgat
cagttacctcgtgatgctactgacattctcgacatccttaaagccgaacaagctcctctc
gacctctggctaatcattgcgagagagtactttaaacaagggaagattgaacagtttcgc
caaattttggaggaaggttctagtccagaaatcaatgaatactatgcagaagtgagatac
gaaaggattgctatattaaatgcattgggcgcttattacagttaccttggaaaaatcgaa
acaaatcctaaggaaaaggacaaccattttacttcagcaacacaatactacaataaggca
tcgagaattgacatgcatgaatcgtctacttgggtgggcaaaggtcagcttttacttgct
aagggtgatgtagagcaggcatttaatacattcaaaattgtacttgatggtgatcccgat
aatgtacctgctcttcttggacaggcatctgtgcagttcaatcgtggacgttattctgag
tccttggaattgtacaagagagctttgagagtgtaccctgattgtcctggagcggtcaga
ctaggcatagggctatgtcgctacaagttgggtcagtttgaaaaggcccgtcaagctttt
gaacgtgtaatgcagttggatccagaaaatgttgaagctcttgtggctcttggggttttg
gatttgcatgcaaatgatgctgttgggatccgaagggggatggaaaggatgctgcttgca
tttgaaatttatccatacaatgccttgtcattgaattatctggcgaatcacttctttttc
acgggtcaacattttttagttgagcagttgacagaaacggccttggctgttacaaatcat
ggaccaactaaggctcattcgtactataatttggctcggtcttatcatagcaagggggat
tatgaaaaggctggacggtattatatggcctctgttaaagagagcagcaagcctcaggaa
tttgtgttaccattctatggtttgggccaagtacaactcaaattgggagactacagaagt
gccctttctagctttgaaaaggttttggaggtatatcctgagaactgcgaaacactaaag
gctcttggtcatatttatgctatacttcaacatacagacaaggctttggaagttttgagg
aaagttactagaattgagccacgcgatgctcaggcatttttggacctgggagaaattttg
atctcatctgactctggggctgctttagatgcctatagaactgcacgcagtcttctaaag
aaagggggtgaagatattccaatagaactcctcaataacattggggttcttcactttgag
aggggagagtttgagcttgcagagcaaacgtttaaggatgctttaggtagtggtgtatgg
ctttcattaatcaatggaaaagaaaacaattatgttacagatgcagtcacagctttgctt
cagtacaaggatgtgcagatgtttcgtcatctacaggaagaaggcaattctgtggaacta
ccatggaacaaagtgtcatccatctttaacctggctcggttgtttgaggaggtgcataaa
actcaaagcgcgattttgttgtatcgcttgattttgtacaagtatccagagtatgtagat
gctcttctcaggcttgctgccatagccaaggctcgaagcaacatacaattgagcattgaa
ttggttggtgaagctctaagggtgaatgataagtgtcccagtgctcttgccgtccttggc
tgcttggagctgaagaatgatgaatgggtcaaggctaaagagacttttcgtgctgctagt
gaggctgctgatgggaaagatttttatgcttctgtttgtttgggaaactggaactacttt
gctgcgcttgtaagtgaattgaaaaaacaggtcaagcatattcctgttcatttggagaaa
gcaaaggaaatttattcaaatgtcttgaagaagtgcactgccaacctttatgctgctaat
ggactgggaatgattcttgcagaaaaagggcaatttgatgtttctaaagaaatatttaca
caggtgcaagaagctggaagtgggacaatcttctgtcaaatgccagatgtgtggattaac
ttggctcatgtgtactttgcccaagggaatcataccttagctttaaaaatgtatcagaat
tgcttgcgaaaatttttctacaatacagagagtcaacttcttttgtatcttgctcggact
tattatgaagctgagcagtggcaggatagcaagcgtgcactactgagagctatgcatttg
tctccgtcaaattatacacttcgattcaatattggtgttgtgatgcagaaattttcagca
tccttgctgaataaggaaaagagatctgcggatgagatgcgcacaacggtttctgagctg
gagattgctatcagtgtgtttggacagcttgctatggcatttcatgagaacatacatgga
attgatgagaagaagatcgagacacatgttagttactgcaagcacttactggatgttgcc
aaagtctacagagaagctgctgaactcgaagagcagcaaagccggcagaaattagagctt
gctcgtcaggtcacattagctgaggaagctcgtcgtaaggctgaagaacaacaaagactt
cagatggaaaagagaaaacaagaggaagagctaagacgagtgaaggaaatggaagagcgc
ttccaacgtgtcaaggagcaattaaagattggtcaacccaagcggaaggaaagggctcaa
agtgaagatgaggatggtgagcacggtgataagaagaggaggaaagggggaaagaagaag
aggagagacaagaagcatcatgaaactgaggaagttgaagttgacagagttgaatatcag
gaagattttgacgaacgcaacaatgaatatgaggatcccactaatcaattcaatgcagca
tatgatgatggggaagaaaatgttcaagatcctcttgctgcagttgggcttgaagattca
gatgcagaagacgatatggtagcacctacgactgcaaatcgacggaggcaggcatgggcg
gaatctgacgatgatgaacctgtatataggcccgaggactctagcccattaagagagaac
actgctcatgagcaggaggctggagttataagggatgatgtgaatgaagcagatgatggt
gttgattaa
DBGET
integrated database retrieval system
