Amaranthus tricolor (tampala): 130824403
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Entry
130824403 CDS
T09367
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130824403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130824403
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130824403
mRNA degradation factors
5'-3' decay
Decapping complex
130824403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
130824403
NCBI-ProteinID:
XP_057545385
LinkDB
All DBs
Position
9:complement(24095765..24118033)
Genome browser
AA seq
1343 aa
AA seq
DB search
MASSGNPNPNPNPNPNQQNHFDMNKLFKPTNLAPIQSSPQNPTTMAAPLTPSASYPPPTA
SPYPFPPQNHPSPPLPYYNQIPSQDLHHQRSVSFPTPPLQPHNPTPGARLMALLSNPPSD
LNYSQQNATQPSSSDFSMASNVQPTPIRMPSRKLPRGRHIVGNHMVYDIDTRVQGEEQPQ
LEVTPITKYVSDPGLILGHQVAVNKTYICYGLKMGNIRVLNINTALRSLLRGHTQRVTDM
AFFAEDVHLLASASIEGRVYVWKISEGPDEEEKPQISGHIVLAIHITGDEGFVHPRVCWH
CHKQEILVVAIGKSVLRIDTTKVHKGVEFSAEEPFVCPLDKLINGVQLVGKHEGEVTDLS
MCQWMTTRLVSASKDGTIKIWEDRKAQPLLVLRPHDGHPVDAAKFLTAPHRPDHIMLITA
GPLNREVKLWASADEEGWLLPSDAESWRCIQTLELKSSVEAQSEEAFFNQVVALSHGGLL
LLANAKKNAIYVIHLEYGANPAVTRMDYLAEFTVTMPILSFTGTSDILPHGEHLVQVYCV
QTQAIQQYALDLSQCLPPPLDNLRLETSESDSRDAADGTPSLEPSASKSFEVPFSTAKPS
ISGVGSSSEVKGPVSAASDTTSIQEIIASNVDSNSVSLLSASSNADVASVPSPALPLSPR
LTKKLSDLRSNQAPTDYPVDGQIDITQTSSSALPSSNYDNRAIQGNALDVVNPPVTFKHP
THLVTPFEIMATSSPDATRVSEKGDNDAKIQDVVLNNDKGNVEMDVKVVGETGFASNDES
TRTADSQVITDRKEKSFFSQASDLGVDMSREYCALPSETSIMEEARNSIMEALAQPSNFC
EEEGDETSNDVSGKAADFSVSTSVPQSSITVSKAKKNKGKNSQVTGSLCPSHSVSNSAEL
LQVPVSGSSVPLMEPNSQILAMHETLNQILAMQKEMQKQMSTVAAAPVVKEGKRLEAALG
RSIEKNSKANTDALWARILEENAKLEKSLRGMTQIPGLISNIVNKELLAVLEKTLKKELP
AVGTNVARVLSPAVEKTISSAITDSFQRGVGDKAASQLEKSVTSKLETTVARQIQVQFQT
SGKQALQDGLRSCLEASIIPAFEMSCKAMFEQVNSAFQKGMAEHTTTATHQIESTNSQLA
LALRDALNSASSLTQTLSGELADNQRKLLALAAAGANSNSGNSLITQLSNGPLAGLHEKV
EQPFDPTKELSRLVSENKYEEAFTAALQRSDVSIVSWLCSQVDLQRLLSTIPLPLSQGVL
LSLLQQLACDISKDTARKLAWMTDVATCINPHDPMIVVHVRPILEQVYQILNHQRSLLNN
SFVELSSIRVVMHIVNSMLLTLK
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggcttccagtggaaatccaaatccaaatccaaatcccaatccaaatcaacaaaatcat
tttgatatgaacaaattatttaaacccacaaatctagcaccaattcaatcttccccgcaa
aaccctacaactatggctgctccattaactccatcagcttcatacccaccaccaactgct
tcaccatatccatttcctccacaaaaccacccatctccgccgttaccgtattacaatcaa
attccttctcaagatttacaccatcaaagatctgtttctttcccgacaccgcctcttcaa
cctcacaatccaactccaggtgctcgattaatggctttgcttagtaaccctccttcggat
cttaattactctcaacaaaacgcaactcaaccgagttcttctgatttttcaatggcgtcc
aatgtccagcctactccaattcgtatgcccagtaggaagcttcctaggggccgtcatata
gtgggtaatcatatggtttatgatatcgatacgagggttcaaggtgaggagcagcctcaa
ttggaggttactccaattactaagtatgtatctgatcctggactcattcttggacaccaa
gttgcagtcaacaaaacctatatttgctatggtcttaagatgggaaatattcgtgtactt
aacattaatactgccttgaggtctctcctacgagggcatacccagagagttacagacatg
gccttctttgcagaggatgttcatttattagctagcgctagcattgagggaagagtttac
gtatggaagatttctgaaggtccagatgaggaagaaaagccacaaatctctggacatatt
gttcttgctattcatataactggggatgaaggatttgtccatccacgagtttgctggcat
tgtcacaaacaagaaatacttgttgtagccataggaaaaagtgtgctcagaattgatact
accaaagtccacaagggtgttgagttttctgcagaggaaccttttgtgtgtcctttggat
aagctaattaatggggttcaacttgttggtaaacatgaaggggaggttacagatttatca
atgtgccagtggatgactactcgtttggtttctgcttcaaaagatggaacgattaagatt
tgggaagatcggaaggcacaaccacttttggtattgaggccccatgatggtcatcctgtt
gatgcggctaagtttctgactgccccacatcgtccagaccacatcatgcttatcacagcc
gggccacttaaccgagaggtgaagctttgggcttccgctgatgaagaagggtggcttttg
cccagtgatgctgaatcttggcggtgcatacagacactagagttgaaaagttctgttgag
gctcaaagcgaggaagcattttttaatcaggttgtagctctctcacatggaggacttctg
ttactcgcaaatgcgaagaagaatgctatatatgtaattcacttagaatatggtgccaac
ccagctgtaacgcgaatggattatttagctgagtttactgttactatgcctattttgagc
tttactgggacaagcgatatattacctcatggagaacatcttgttcaggtttattgtgtc
cagacacaagccatacagcagtatgctttggacctctcacaatgcctgccaccgccattg
gataacttgagattagagacatcagagtctgattctcgtgatgctgctgatggaactcct
tctttagagccatctgcaagtaaatcttttgaagttcctttttctacagccaaaccaagt
atcagtggcgttggcagttcatctgaagttaagggtcctgtgagcgctgcttctgataca
acctccattcaagaaattattgcttcaaatgtggattccaattctgtttcgttattatct
gcatctagcaacgctgatgtggcctctgttccatctcctgctcttcctcttagtccaagg
ttgacgaaaaaactcagtgatctccgtagtaatcaagctcctactgattatcctgttgat
gggcagattgatattacacaaacaagttcatcagccttgccttcctctaattatgataac
agagctatacaagggaatgctcttgatgtagtcaatccacctgtcacatttaaacaccca
actcatcttgttacacccttcgagattatggctacttcatcacctgatgcaacccgtgtt
tctgaaaaaggtgacaatgatgctaaaattcaagatgttgttttgaataatgacaaagga
aatgttgaaatggacgttaaagttgtgggtgaaactgggtttgctagtaatgatgagtct
actcgtacagcagattctcaagtcataacagacaggaaggagaaatccttcttttctcag
gcgtctgatcttggggttgatatgagtcgagagtattgtgcattaccatctgaaacatct
attatggaagaagctagaaatagcattatggaggctctagcacaaccatcaaatttttgt
gaggaggaaggagatgaaacaagcaatgatgtgtcaggaaaggctgctgatttttctgtc
tcgacgagtgtgccacagtcttctataactgtttccaaagcgaagaagaataaagggaaa
aattctcaagtaaccggttcactgtgtccttcacatagtgtctcaaattctgcagaactg
ttgcaggtgcccgtttcaggttctagtgtgccgttaatggagcctaattcacagattctg
gctatgcatgaaactcttaatcagatattagcaatgcaaaaagaaatgcagaagcagatg
agtacagtggcagctgcaccagttgtcaaagagggaaaaagattagaggcagctctagga
cgtagcatagagaagaattcaaaggcaaatactgatgctttatgggctcgtatactggaa
gagaatgctaaactcgaaaagtcattacgaggtatgacacaaattcctggtcttataagt
aacattgtgaacaaggagctgcttgctgtacttgagaaaacattgaaaaaagaattgcct
gcggttggaacaaatgtagctcgtgtattaagtccggctgtagagaaaactatttcttct
gctataacggattcctttcagagaggagttggtgacaaggcagcaagtcaactggaaaag
tctgtaacatcaaaacttgaaactactgttgctaggcaaatccaagtgcagtttcagact
tctggtaaacaagcacttcaggatgggttgagatcttgtttagaggcttctattatccct
gcttttgagatgtcctgcaaagcaatgtttgagcaagttaattctgcattccagaaggga
atggctgaacatacgactacagcaacacatcaaatagaatcgacgaattcccagttggct
cttgctctgagggatgctctaaattcagcatcatctcttactcaaaccttgagtggagaa
ttggctgataatcagaggaaactgttagctctagcagctgctggtgcaaattcaaactct
ggaaattcattgattacccaattgagcaacggtcctttggcgggtctgcatgagaaggtt
gagcagccattcgatccaaccaaagaattatctaggctagtttctgaaaacaagtatgag
gaggcattcactgctgctttgcaaagaagtgatgtatctattgtctcctggctatgttca
caggttgacctgcagcgactgttgtcaacaattcctctgcctttgagccaaggggtttta
ctgtctcttctgcagcagctcgcttgtgatatatcaaaagatacagctagaaagctggcg
tggatgactgatgttgctacttgcataaacccgcatgatccgatgatcgtagtgcatgtg
cgtccgattttggagcaggtttaccagatattaaatcatcaacgaagcctccttaacaac
tcgttcgtagagttgtcgagcatccgtgtggtcatgcatatcgttaattccatgttgttg
accctcaaatga
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