Amaranthus tricolor (tampala): 130824570
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Entry
130824570 CDS
T09367
Name
(RefSeq) DNA mismatch repair protein MSH7 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
130824570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atri03400
]
130824570
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
130824570
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
130824570
NCBI-ProteinID:
XP_057545609
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All DBs
Position
9:17828206..17844515
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AA seq
1107 aa
AA seq
DB search
MKRQRSILSFFQKPSSENRNLGAGDKLNGGETPCKFSSLESFNSGTIQPNEFTSKPAISS
VEEVQGADTPPEKVPRQVMVDNLTPVDEMKKSTVFSSIMHKFVKSGDNNKVSQRGFCRTQ
DNDGSSIIYSMFDIFNDCKEVPKDSSSSLIQESISNAKLQDCLLDSKDDVNVVQPETPLG
RPFVPRMKRVQENCTDFEDKTDFDLTKSSKRVKFLAEDSKPENKIPLDVSEVASKFEWLH
ASKIKDANRRRPSDPLYDKRTLYIPPDTLKKMSASQKQYWSVKCQYMDVLLFFKVGKFYE
LYELDAEIGHKELDWKLTNSGVGKCRQVGISESGIDEAVQKLVARGYKVGRMEQLETSDQ
AKARGASAVIPRKLVNVITPSTIADENVGPDAVHLLAIKEGSIEVDGGTTTFGFAFVDCA
ALKIWIGSVSDDASCAALMALLMQVSPKEIIYESRGLSKEAQKVIRKYSSTGSNSVQLTP
TFPVNGFPGDIGVKDVIQSKKYFKNSCDLWDHLLDGVTNHEVTLCALGGLIDHLSRLMLD
DVLCNGDVFPYQVYRGCLRMDGQTLINLEIFNNNADGGSTGTLFKHLDNCITSSGKRLLR
SWICHPLKNVEQINNRLNVVEALVMQPEIMLVVAQYLRKIPDLERLLGNVKAMVNSQAIL
MLPLVGKKTLKQRVKVFGTLVKGLRTGMDLLLVLQNEEHIKSLLLKIFYFPERSGHDTLS
EFLHQFEATIDSDFPKYQDHDATETDAETLSILIELFVEKYSQWSQVIFSLNCIDVLRSF
AAIAIDSRGCMCRPSILPESTFVSVCQNNKGPILKIKGLWHPFALREFGVPVPNDIVLGE
DTNSQNPRTLLLTGPNMGGKSTLLRASCLAVIMAQLGCYVPCEMCVLSVADIIFTRLGAT
DRIMTGESTFYIECAETASVLQNATQDSLVLLDELGRGTSTFDGYAIAYAVFRHLIEKVN
CRLLFATHYHPLTKEFASHPHVSLQHMSCAMRPTSSSGKDFDLVFLYRLASGACPASYGL
QVALMAGIPKQVVEAASTASEAMKEMIGASFKSSEQRSEFSTLHEQWFKTILSLACEQGN
FDDDTYDSLFCLWHELKTSYRKSLAPV
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtcaaagatcaattctctcattcttccagaaaccttcatcggaaaatcgcaat
ctcggtgctggagataagctcaatggcggagaaactccgtgtaagttttcttcgctggaa
agctttaatagcggaactattcaacctaatgaatttacttctaaacctgcaatttcttcg
gttgaagaagttcaaggtgccgatacacctccggagaaagttcctcgtcaggttatggtt
gataatttaactcctgttgatgagatgaagaaatctacagttttttctagtattatgcat
aaatttgtcaagagtggtgacaataacaaagtttctcagcgtggcttttgcaggacccaa
gacaacgatggttcctcaattatttactcaatgtttgacatatttaatgattgcaaagaa
gtgccgaaggactcttcctcttctttgattcaggagagtatttctaatgcaaagcttcaa
gactgtctgttagatagcaaagatgatgtcaatgttgtccaaccagaaactccattgggc
cgaccatttgttccacgcatgaagcgtgttcaggagaattgtactgattttgaggataaa
actgacttcgacctgacaaaatctagcaaaagagtgaaatttcttgcggaagattcaaag
ccagagaacaagattcccttagatgtttcagaagttgctagcaagtttgagtggctccat
gcttctaaaattaaggatgcgaatcgaagaaggcctagtgaccctctctatgataaaagg
acgctttatataccacctgacaccttgaagaaaatgtctgcatcacagaaacagtattgg
agtgtgaaatgtcagtatatggatgtgctgctgttctttaaagttgggaaattctatgaa
ctttatgagctagatgctgaaatagggcacaaggaactggattggaaattaacaaatagt
ggtgtggggaaatgtagacaggttggtatttctgaaagtggcattgatgaagctgtgcag
aagttggttgctcgagggtataaagttggacgaatggagcaactagagacatcagatcaa
gcaaaagcaaggggtgcaagtgctgtgatccctagaaagttggttaatgtgatcacacca
tcaacaatagctgatgaaaatgttggccctgatgctgttcatcttcttgcaataaaggag
gggtctattgaggtagatggtggtacaacaacatttgggtttgcttttgttgattgtgct
gcattaaaaatttggattggttctgtcagtgatgatgcttcctgtgctgctttaatggcc
ttgttaatgcaagtgtctcccaaggaaattatttatgaaagtagaggtttatctaaagaa
gctcagaaagtaattagaaagtattcatctacaggctccaacagtgtacagcttacaccc
acgtttcctgttaatggttttccgggtgatattggagttaaggatgtgatccagtcaaag
aaatattttaaaaattcttgtgacctgtgggatcatctgcttgatggtgtaacaaatcat
gaagttaccctatgtgctttgggtggtcttattgatcatttatccagattgatgttggat
gatgttttatgcaatggagatgtgtttccataccaagtatataggggttgcctcagaatg
gatggacagacactaatcaatcttgagattttcaataacaatgctgatggtggttcaact
ggaacattattcaaacatcttgataattgtataacatcttcggggaagcgacttttgagg
agttggatttgtcatccattaaaaaatgttgagcaaatcaataataggcttaatgtggtt
gaagctttagttatgcaaccagaaatcatgttggttgtggcacaatatcttcgcaaaatt
ccagatttagaaagattgcttggcaatgttaaagctatggttaattcacaagccatactc
atgttacccttggttgggaagaaaacattgaaacaaagggtgaaagtatttggcactctt
gttaagggtttaagaactggaatggacttgctgcttgtactacaaaatgaagagcatatc
aagtcattgctattgaaaattttttattttcctgagcgtagtgggcatgacacgctcagt
gagtttctacaccaatttgaagctactatagatagtgacttccctaagtatcaggatcac
gatgcaacagaaaccgatgctgagacactctctattttgatcgagttatttgttgagaaa
tatagtcaatggtctcaagtcatattttcccttaattgcatagacgtcttaagatctttt
gccgccatcgctattgattcaaggggatgtatgtgtcggccttccatcctaccagagtct
acctttgtttctgtttgtcaaaataacaaaggacctatacttaaaatcaaaggattgtgg
catccatttgccctcagagaatttggagttcctgtgccaaatgacatagttctgggagag
gatacaaatagccaaaatccccgaactcttctgttgactggaccaaacatggggggcaaa
tcaacgctcttgcgtgctagttgtctagcagttataatggcacagcttggctgctatgtt
ccatgtgagatgtgtgttctatcagttgcagacattattttcactaggcttggtgcaact
gatcgaattatgacgggtgaaagtacattttacattgagtgtgcggaaacagcatcagtt
ctccaaaatgcaacacaagactcccttgtcctactcgatgagctgggtcgaggaacaagt
actttcgatggatatgccatagcatatgctgtatttcgccatttaattgagaaggtaaac
tgtcgcttactgtttgccacacattaccacccactgacaaaggaatttgcatcgcatcct
catgtttctctacaacacatgtcctgtgctatgaggcctacatcctcatcaggaaaggac
tttgatttggtgtttctctatcgacttgcatctggagcttgtcctgcaagctacggctta
caggtggctcttatggctggaatacccaaacaggtagtagaagcagcttcaactgcaagc
gaggcgatgaaagagatgataggtgcaagcttcaagtcaagcgagcaaagatcagagttc
tctacgctacatgaacagtggtttaaaaccatactttctcttgcatgtgagcaaggtaat
tttgatgatgatacatatgattccctattttgcttatggcatgagctaaaaacctcatat
aggaaatctttagctcctgtataa
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