Amaranthus tricolor (tampala): 130825163
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Entry
130825163 CDS
T09367
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130825163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atri03041
]
130825163
Spliceosome [BR:
atri03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
130825163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
EIF3I
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
PRP4
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_WDR41
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_SPT8
PEP5_VPS11_N
Tricorn_2nd
WD40_like
Motif
Other DBs
NCBI-GeneID:
130825163
NCBI-ProteinID:
XP_057546219
LinkDB
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Position
10:1732984..1738906
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AA seq
582 aa
AA seq
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MEVDEENPSSASVPAPETSPVADTEMLETSAVTISVPITAVPPSIPPIIAPLSAPPPVLV
PPIAPLPVPHVVPRPLAPLPVRLPVLKPSVVQNGEVKPSESESDDEPGLGKGAQDSSVDY
EITEESRQVRERQEKAMRDLMMKRRAAALAVPTNDMAVRTRLRRLGEPITLFGEREMERR
DRLRMLMAKLDSEGQLEKLLKIHEEEEEAASKDVVEDEMIQYPFYTEGTQELLEARKCIA
EFSIVKASQRLQRARRKRDDPDEDEDAEIDWALKQAETFVLTSSEYGDDRPLWGCSFSKD
GSMLATCSSSGVAKIWSMPQVGKVSALKGHTEHVTDVVFSPVNENVATASADRTARLWDT
KGTQLRTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDIESGAELLLQEGHSRSVYGM
CFHPDGSLAASCGLDSLSRVWDLRTGRSILALEGHVKPVLGVDFSPNGYHLATGSEDNTC
RIWDLRKKKSLYIIPAHSKLISRVKYEPQEGYYLVTTSYDTTAKVWSSRDFKPVKTLSGH
EARVTSLDITEDGQSIVTVAHDRTIKLWSSSTPSEEKLMDVD
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atggaggtagacgaagagaatccctcttcagcttcagttccagctccagaaacaagtcct
gtggctgacactgagatgctggaaacttcagctgttaccatttcagttccaatcacagct
gtgcctccatcaattcctccgataattgcacctttgtcagctccacctccagtacttgta
ccaccaattgctcctctacctgtgcctcatgtagttcctagaccattagcacctctccct
gttcgactccctgtgcttaaaccatctgtggtgcaaaatggcgaggtaaaaccaagtgaa
tcagaatctgatgatgaaccgggtctgggaaagggtgcacaggattcctctgttgattat
gaaatcacagaggaaagtcgacaggtaagagaacgccaggagaaggctatgcgggatctc
atgatgaagcggcgagctgctgctctagctgtgccaacaaacgacatggcagtgcggact
cggcttcgtcgtcttggtgaacccatcactctctttggggagagagagatggaaagacgg
gaccgacttcgaatgctgatggcgaagctcgacagtgagggtcaattggagaagttgctg
aaaattcatgaggaagaggaggaagcggcttctaaggatgtcgttgaagatgaaatgatt
cagtatccattttatacagaagggacgcaagagttattggaggctcggaaatgcattgca
gagttctctatagttaaagcatctcagcgtctgcagcgtgcaaggaggaaaagggatgat
ccagatgaagatgaggatgctgagatagattgggctcttaaacaggctgaaacttttgtt
ctgacttccagtgagtatggtgatgaccgtccactttggggatgttcattctcaaaggat
gggagtatgctcgctacatgttcttctagtggggttgccaagatatggagtatgcctcag
gtgggaaaggtctctgccttgaaaggacatactgagcatgtaactgatgttgtattttct
cctgtaaatgagaatgttgcaactgcctcagctgatcgtacagcaaggctctgggacaca
aagggtactcaattgagaacgtttgaaggtcatctagaccgactagctcgtattgccttc
catccatctgggaagtacttgggcactgcaagttttgacaaaacttggcgtctgtgggat
attgaaagtggtgcagagttgcttcttcaagaaggtcatagccgaagtgtttatggcatg
tgtttccatcctgatggatcattggcagcatcttgtggtctagattctctttcacgtgtt
tgggatcttcgaacaggaagaagtattcttgctttggaaggacatgtcaaacctgttctt
ggagttgatttctctcctaatggctatcatttggccactggttctgaggataacacttgt
aggatttgggacttgagaaagaaaaaatccttgtacattattccagcacattcaaagctg
atttcacgggtcaaatatgaacctcaggaaggatattatctggtcaccacttcatacgac
acaactgctaaggtatggtcttctcgagacttcaagccagtaaagacattgtcagggcat
gaagcaagagttacatccttagatattacagaagatggacaaagcatcgtgactgttgcg
catgataggaccattaaattatggtcaagcagtaccccttcagaagagaagttgatggat
gtggattga
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