Amaranthus tricolor (tampala): 130825182
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Entry
130825182 CDS
T09367
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130825182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130825182
03012 Translation factors [BR:
atri03012
]
130825182
Enzymes [BR:
atri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130825182
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
130825182
Translation factors [BR:
atri03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
130825182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
T2SSE
Myosin_head
ABC_tran
PhoH
Motif
Other DBs
NCBI-GeneID:
130825182
NCBI-ProteinID:
XP_057546259
LinkDB
All DBs
Position
10:complement(4223202..4241157)
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AA seq
1187 aa
AA seq
DB search
MPYSSPFLHGCFRTTPRLAMSLKPARNFHNIYYSLCPWRPFSGLPFGAQKSYKSLVYRPF
LWRFSVAASGRSYELIRRSNEKLPNWFHQSKEFGRFAYDDYSDDDSDRESSSAQQLQSST
LDNIDQWRWKLTMLVRNKDEQEIVSRERKDRRDFEQLSALATRMGLHSRQYSKVVVFSKV
PLANYRHDLDDKRPQREVVLPLDLQKDVGFLLKRHRSQKSSNQGTSSIYSVLQINYPNKQ
EVVYNQPEPTTQISPSKERILRRKSLQLRDRQQEWQDSPEGQKMLQFRRSLPAYKERDAF
LKTIAENQVVVVSGETGCGKTTQLPQFILESEIVAARGASCNIVCTQPRRISAMSVSERV
ASERGEQLGESVGYKIRLEGMKGRDTRLLFCTTGVLLRRLLVDRDLSGVSHVIVDEIHER
GMNEDFLLIVLKDLLPRRPDLRLILMSATLNAELFSSFFGGAPTLHIPGFTYPVRAHFLE
NILENTGYRLTPYNQIDDYGQEKIWKMQKQSVRKRKTHIASAVEEALEDADFHGYSRWTR
DSLSCWNPDSIGFNLIEHVLCHICKNERPGAILVFMTGWEDINSLKDQLQSHPLLGDPNK
VLLLACHGSMASSEQRLIFDRPPEGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYD
ALNNTPCLLPSWISKAAARQRRGRAGRVQPGDCYHLYPKCVHDAFSDYQLPELLRTPLQS
LCLQIKSLQLGDVSEFLSKALQPPEPLSVQNAIDFLKIIGALDENENLTLLGQNLSKLPV
EPKLGKMLILGAMFQCLDPIMTVVAGLSVRDPFLTPFDKKDLAESAKAQFSAREFSDHLA
LMRAFEGWKDAEREKSGYEYCWRNFLSAQTMKAMDSSRKQFFSLLKDTGLVGPDNESCNK
WSHDVHLVRSIICAGLFPGVCSVVNKERSIMLKTMEDGQVLLYLNSVNAQEPKIPYPWLV
FNEKMKVNAVFLRDSTAVSDSVLLLFGGDISRGLQDGHLQMMGGYLEFFMKPALADIYVS
VKRELEELIHCKLAEPKLDIGKYMDLLSAVRMLITEDQCEGRFVFGRQLPTPSKKAAKTK
SAQCENVGGDDNSKGQLQTLLARAGHETAEYKTRQLKNNQFRSTVSFNGLEFVGQPCNNK
KQAEKDAAGEALQWLMGDTPSFRGDIDQLSMFMKKSSKKYGKRTWDR
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgccctattcttctcccttcttacatggctgtttccgcacaactccacgcctcgccatg
tctcttaaacctgcaaggaattttcataacatttattattctttatgtccgtggagacct
ttctcaggccttccatttggtgcgcaaaagtcatacaaatccttagtttataggcctttt
ctttggcggtttagtgttgctgcttcaggaagatcgtatgagttgatacggagaagtaat
gagaagttgccgaattggtttcatcaaagcaaggaatttgggaggtttgcttatgatgat
tactctgatgatgattctgatagggaatcttcttctgcgcagcaattgcaatcttctact
ctcgacaacattgaccagtggagatggaaattgacaatgcttgttagaaacaaagatgag
caagaaattgtgtcaagagagagaaaggacaggcgtgactttgagcaactttctgcattg
gccactagaatgggtctgcatagccgccaatattccaaagtggtggtttttagtaaagtt
cccttggcaaattatcgtcatgatctggatgataagcgtccacaacgagaggttgtactt
ccacttgatcttcaaaaggatgtgggatttcttctcaagaggcaccggtctcaaaaatcc
tcgaatcaagggacttcttcaatttattctgttttgcagatcaattatccgaataagcag
gaagttgtgtacaatcagcctgagcccacaactcagataagtccatcgaaggagagaata
cttcggcggaaaagtctgcaactacgggatcggcagcaggaatggcaggattcaccagag
ggtcaaaagatgctacaatttcgaagaagcctacccgcgtacaaagagagggatgctttc
ttaaagacgatagcagaaaatcaggtagtagttgtctcaggagaaactggctgtggtaaa
acaactcaactcccgcaattcattttagagtctgaaattgtagctgctcgtggcgctagt
tgtaatattgtttgtactcagccgagaagaatatcagctatgtctgtttctgagagggtt
gcttctgaacgaggagagcaacttggagaatcagttggctacaaaataagattggaggga
atgaaagggagggacacacgactccttttctgcaccactggtgtgctgttgaggagactg
ctggttgatcgagatctgagtggtgtatctcatgttattgttgatgaaattcatgaacgt
ggaatgaatgaagattttctcctaattgtgttgaaagatctcctaccccgaagacctgat
ttaaggttgattttgatgagtgcaaccctaaatgctgagcttttctcctcattttttggt
ggagctcctacactacacattcctggtttcacatatcctgtacgtgctcattttctggag
aatatcttggaaaacactggatataggctgaccccctataatcagattgatgattatggt
caagaaaagatttggaagatgcagaaacaatctgttagaaagagaaaaactcacattgct
tcagcagtagaggaggcattagaagatgctgattttcatgggtatagtcgttggactaga
gactctttgtcttgttggaacccggattccattggttttaatcttattgaacatgtgctg
tgccacatatgtaagaacgaaagacctggtgcaattttagtttttatgactggttgggag
gatatcaactctttgaaggaccagcttcaaagccatcctttacttggagatccaaacaag
gttttgctgcttgcatgccatggttccatggctagttctgaacagagactgatatttgat
aggcctccagaaggagtgaggaaaatagtacttgcaacaaatatggccgagaccagtatc
accataaatgatgtagtctttgttgttgattgtggtaaagcgaaggagacttcatatgat
gcattgaataacactccctgcttgctaccttcctggatctctaaagctgctgctcgtcag
cgaagaggtagagctggtcgtgttcaacccggggattgttaccatctttaccctaaatgt
gtccatgatgcattcagtgattatcagttgcctgaacttttgaggacacctctacaatct
ctttgtcttcagattaaaagcttacagcttggtgatgtttctgagtttctgtcaaaggct
ttgcaaccccctgaaccattatcggttcaaaatgctattgattttttgaagattattgga
gctctggatgagaatgaaaatcttactctgctaggccagaacttatccaagcttcctgtg
gagcctaaactaggaaaaatgctaatattgggggctatgtttcaatgcctagacccaata
atgaccgttgttgctggtttaagtgtcagagacccgttcttgacaccttttgacaagaag
gatctcgcggagtctgcaaaggctcaattctctgctcgtgagttcagtgaccatcttgcc
cttatgcgagcttttgaaggatggaaagacgctgaaagagaaaaatctggttatgaatat
tgttggagaaactttttgtctgcccagacaatgaaagctatggattcgtcgcggaagcag
ttcttctctttactcaaggatacaggtcttgttgggcccgataacgaaagctgcaacaag
tggagccatgatgtgcatcttgttcgttcaattatctgtgcgggtctgtttcctggtgtt
tgttcagttgtgaataaagagaggtcaataatgttgaaaacaatggaggatggacaggtc
cttctatatttgaattcagtgaatgctcaagagcctaaaataccatatccatggctggtc
tttaacgagaagatgaaggtcaatgcagtgttcttgagggattcaacagcagtttcagat
tctgtgctgttactttttggaggagacatttcaagaggtttacaggatggacacctacaa
atgatgggaggatacttagagttttttatgaaacctgccttggcagacatctatgtgtcc
gtgaaaagagaacttgaagagctaattcattgcaagcttgcagaacccaagttggatatc
ggcaaatacatggatctcctatctgcagtgagaatgctgataacagaagatcaatgcgag
ggtagatttgtcttcggtcgtcaacttccaacaccatcaaaaaaggcagcaaaaacaaaa
agtgcgcagtgtgaaaatgtgggtggtgatgataactccaagggtcaattacaaacctta
ctggcaagggcagggcacgaaacagctgagtacaaaacaaggcaactgaaaaacaaccag
ttccgttcgacagttagtttcaatgggttggagtttgtgggacaaccttgtaacaataaa
aagcaggcggaaaaggatgcagctggagaagctttacaatggttgatgggtgatacccct
tcattccggggtgatatagaccaattatctatgtttatgaagaaaagcagcaaaaaatac
ggaaaaagaacttgggataggtaa
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