Amaranthus tricolor (tampala): 130825459
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Entry
130825459 CDS
T09367
Name
(RefSeq) serine/arginine-rich splicing factor RS41-like isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130825459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atri03041
]
130825459
Spliceosome [BR:
atri03041
]
Common components
Common spliceosomal components
SR proteins
130825459
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RNA_bind
Nup35_RRM_2
RRM_Nup35
RRM_5
CTD
RBD_RDR6
Motif
Other DBs
NCBI-GeneID:
130825459
NCBI-ProteinID:
XP_057546682
LinkDB
All DBs
Position
10:17890163..17895804
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AA seq
371 aa
AA seq
DB search
MKPIFCGNFDFDARPSDLERLFRRYGKVDRVDMKSGFAFVHMDDEKDAEYAIRALDRSEF
GRKGRRLRVEWTKHEQRQIGRKPVSSRRSANSRPSKTLFVINFPYHAKISDLERHFEPYG
KILNVRIRRNFAFVQYESQEDATKALDATNSRKFLDQVISVEYSIRDDDDRRGGYSPERR
GRDRSPDRRRSPSPYRRERGSPDYGTGPTPASYKGERGSPDYGNGSSRSPLRVRRSPEYG
ARSGRSPHRGQRSPAYGARNRSSRSPHQTSRERSPHYGHERSSSTHHKECSPVLHDHSRS
PHGGDRIGNGYGHCPSSSPYPEEGAISDDLREPRSPINKESLRDSPIGECGSPIDNRYKS
PSPQARRRSQS
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaatcttttgcgggaactttgattttgacgcacgtccatctgatttagagcgt
ctttttagacgatatggcaaagtggatagagtggatatgaagtctggatttgcatttgtg
catatggatgatgagaaagatgcggaatatgcgattcgggctcttgatagatctgaattt
ggtagaaagggaaggagacttcgtgttgagtggacaaagcatgaacaaagacaaattgga
agaaaaccagtcagctcaagaagatctgccaattcgaggccttctaagaccttatttgtt
attaattttccttatcatgcaaaaataagtgacttggaaagacactttgaaccatatggg
aagattttaaatgtaaggataagaagaaattttgcctttgtgcagtatgagtctcaggag
gatgctactaaagctttggatgctaccaattctagaaagttcttggatcaagtcatatct
gttgaatattctattcgagatgatgatgacagaagaggtgggtatagcccagagagaaga
ggccgtgataggtctcctgataggaggaggtcaccaagtccttacagaagagagagagga
agtcctgactacggaactggacctacgccagcttcctacaagggagagagagggagtcct
gattatggtaatggctcaagtcgtagtcctcttcgagtgagaaggagtcctgaatatggg
gctcgctctggccgtagtcctcatcgaggacaaaggagtcctgcatatggggctcgtaac
cgttcaagccgtagtccacatcagacatcgagagagaggagcccacattatggccatgaa
cggagctctagtactcatcacaaggagtgttcacctgttcttcatgatcatagtcgaagt
cctcatgggggggacagaattgggaatggttatggccattgtccgagttcaagcccgtat
ccagaggaaggggccatatctgacgatcttagggaacccaggagccccattaacaaggaa
agcttgagagacagccctattggtgaatgtggaagcccaattgacaacagatataaaagc
ccctctcctcaagcgcggcgaaggtcacaatcttga
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