Amaranthus tricolor (tampala): 130825501
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Entry
130825501 CDS
T09367
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80 isoform X1
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
130825501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atri03400
]
130825501
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
130825501
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
Motif
Other DBs
NCBI-GeneID:
130825501
NCBI-ProteinID:
XP_057546740
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Position
10:complement(5802876..5813199)
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AA seq
740 aa
AA seq
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MARNKESLVLLLDVGPKMHGVLLQVEKVCAMLLEKKLLYNKFDEVGIVLFGTKETKNDLT
VEVGGYENIVVLRNIKVVDGDLVDALESLPQGTVPGDFLDAIVVGMDMLIKKYGPTNKGK
KRLCLITNALSRLRDPFEGTKEDQVCAIARQMTEQAMKLECIVVRGELSGDADKNVMDEN
DQLLDLFTKRTCAKTLYVENATSLLGALRTRSVAPVTIFRGDLEISSSLKIKIWVYKKTS
EEKFPTLKKYSDKAPATDKFATREIKIDYEYRSIHEPDKIVPPEQRIKGYRYGPEVVPIS
SDAWEAVKFTTEKSVKLLGFTDAKNIRRQYYMKDVNIFTAEPGKREAMIAVSALAKAMKE
MNKVAIVRCVWRQGQAGVVIGVLTPNISVKDNIPDSLYFNVLPFAEDVREFQFPSFKNLP
EIFQPSEEQQEAADNLVKMFDLAPPAKEENLKPDLTPNPVLERFYHFLELKAKNPDAAVP
PLDVALKSITEPDAEFVSQNKSVIDEFQRCFELKANIKKKKSTRSTRERPSGSDDEKEAP
KNLDEGKPLTTTRDNSAVKVENRDEKQSNKTHFNAPANNTVAVCESIENIAPIQEFEAML
SRRDSPDWVVKAIRGLKTKILDLLDDSIDQNNYDKALACLFALRKGCVLEQEPAQFNNFL
GYLNRYCKEQDLHDFCEFLGSKGMTLITKTEAPDRLISNLPANLNLFLICRFTPLFLGSS
SKCTLGHFSSTILLIQLIFL
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtaacaaggaatcgctggttttattgcttgatgttggtccgaaaatgcatggt
gtacttctacaagttgagaaagtttgtgccatgcttttggagaaaaagctactttacaac
aaatttgatgaagtgggaatagtcctatttggaactaaagaaacaaagaatgacctcact
gttgaagttggcggatacgaaaatattgtggtcctgaggaacattaaggttgtagatgga
gatctcgttgatgctctagaatcgcttccacaggggactgttcctggtgactttcttgac
gcaattgttgttgggatggatatgctaataaagaagtatggacccactaacaagggaaag
aaacgcctttgtcttatcaccaatgcgctctctcgtttgagagatccttttgaaggaaca
aaagaagatcaagtctgcgctattgctcggcagatgactgagcaggccatgaaattggaa
tgtattgtagttagaggggagctaagtggtgatgctgataagaatgtgatggatgaaaat
gaccagctattagaccttttcacaaagagaacttgtgcaaagactctttatgttgaaaat
gcaacatcactgttaggagctctcaggactcggagcgtagcccctgttacgatttttagg
ggtgatcttgaaataagctcttctctaaagatcaagatttgggtgtacaagaaaacttcc
gaggaaaaatttccaaccctaaagaaatattcagataaggcaccagcaacagataagttc
gccactcgtgagattaagattgactacgaatatagaagcattcatgaacctgacaaaata
gtgcctccagaacaaaggataaaaggttatcgttatggaccagaagtggtacccatctca
tctgatgcttgggaagctgtcaagttcacaacggagaagagtgtgaagctccttggattc
actgatgctaaaaacattcgacggcaatattacatgaaggatgtcaatatattcactgct
gaacctggcaaaagagaagctatgattgctgtttctgctttggctaaagcaatgaaggaa
atgaataaggtagccatagttcgttgtgtttggaggcaagggcaggctggtgttgtgatt
ggagttttgacaccaaacatatccgtgaaggacaatattcctgattccttgtatttcaat
gtactgccgtttgctgaggatgtacgcgagtttcagtttccatctttcaagaatcttccg
gaaatatttcagccctctgaagaacagcaggaggctgctgataatctagtgaaaatgttt
gaccttgcaccacctgccaaagaggagaatctgaagcctgacctcacaccaaatcctgtt
ttggagcggttttaccactttctagaactaaaagcaaagaacccagatgccgctgtgcct
ccacttgatgtagccttgaagagcataactgaacccgatgcagaatttgtttctcaaaac
aagtctgtaattgatgaatttcaaagatgctttgaattaaaggcgaatataaagaagaag
aaatcaactaggtcgactagggagaggccatctggatctgatgatgagaaagaggctcca
aaaaaccttgatgaggggaaaccattgacgaccactcgtgataattctgcggttaaggtt
gagaacagggatgagaaacaatctaataagacccattttaatgctccggcaaataatact
gtggctgtttgtgagagtattgaaaatattgccccaatccaggagttcgaagctatgttg
tctcgtagagatagccccgattgggttgttaaagcaatcagaggtctgaaaaccaaaatt
cttgacctcttggacgactcaattgatcaaaataactatgataaagctttagcgtgtctt
tttgcccttcgaaaaggctgtgtacttgaacaggaacctgcacaattcaacaactttctg
ggctatctgaatagatattgcaaggaacaagacttgcatgatttttgtgaattcctcggc
tcaaaagggatgacattaatcacaaagacagaagccccagacaggttaatttctaatctt
cctgcgaatcttaacttgtttctaatttgtcgcttcactcctctatttcttggttcttcc
tccaaatgtaccctgggtcatttttctagtactatattgttaattcagttaatttttctt
taa
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