Amaranthus tricolor (tampala): 130825596
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Entry
130825596 CDS
T09367
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130825596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atri03041
]
130825596
03009 Ribosome biogenesis [BR:
atri03009
]
130825596
Enzymes [BR:
atri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130825596
Spliceosome [BR:
atri03041
]
Complex A
U1 snRNP components
U1 related factors
130825596
Complex B
130825596
Ribosome biogenesis [BR:
atri03009
]
Eukaryotic type
Pre-60S particles
Helicases
130825596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
AAA_19
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
130825596
NCBI-ProteinID:
XP_057546888
LinkDB
All DBs
Position
10:complement(6621670..6629997)
Genome browser
AA seq
1158 aa
AA seq
DB search
MANLEAASPAAGPRYAPDDPNLPKPWKGLIDGSTGLTYYWNPETNITQYEKPASAPPPVP
SAVPHVDTASQTTVQHGQPADASQYQQQYMNQLSQQPGQFQGPISQQQGHYQGPQTASNP
QQQPAQIPPSGQQQYVHYGQGMPQRSSQIGLAPVQQGQATQPQHYGPPMTQQSGQQLLPH
QGSQMVQHPIQHNSQQLGQQAPLHQGPTAAQSQGLHYMPHQMQYAPYQQPPMHPQGQQNV
QLHPQVTPQGPQFSYQQDNRNAQQDDSDYPKQTGSSISQVEQSGHTAGHGPPSMNTSNHG
LQGSPLSGQSQPYASSVHMHQPHPNVKVPETRSDIANQHPSTYQNQMGQSFMQGQQHGLP
PVARNMGYDESQQLRSGKGYDFNASKDSPLVPPLHPNLAAVPMPRNQQDSRMGAFSHQNV
PPGHDGLNKISAPGMHSMYNHANVDPPIPNQPFMRPSPMMPGSTDALNISSVEAYRQQHE
VTATGENVPAPFMTFEATGFPPEILREMHSAGFASPTPIQAQTWPIALQNKDIVAIAKTG
SGKTLGYLMPAFMHLRQRRNNSRNGPTVLVLAPTRELATQIQDEAIKFGRSSRISCTCLY
GGAPKGPQLEELRRGADVVVATPGRLNDILETRNIDLRQVSLLVLDEADRMLDMGFEPQI
RKIVNEIPPLRQTLMYTATWPKEVRKIAGDLLRSPVQVNIGSVDELAANKSITQYVEMVP
QFEKQRRLEQILRSQERGSKVIIFCSTKKLCNDLARSISRSFPAAAIHGDKSQSERDYVL
NQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTF
FSEQDWKHAADLVKVLEGANQQVPAQVREMALRGGHGFNKDRNIMNRFDTGPGPAFGGGG
RWDSGGRGGNMGDGGRGGMRDRDSSFGGRGGFGASRGGSGMRNDGFGGRGMRERDDYGRG
GRVDNGGRGYRGGRGFGGPGGYGGRSRDDYGSNERFNNRDVGFGRGRGRGRFDNRRDATR
SRGRSYSRSPEKVRTWGGYSRSVSRSRSRSRSRSRSRTPRRSYSRSRSRGRTRSRSRSRS
RSYDGYERPTRRERRPSGFDMLPETDNHQQKDLAATIVGPPAVPQITNSNSLSVYDAGAK
LDEKDHIVHSGVVNQSDD
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatcttgaagcagcttctccagctgctggtccaaggtatgcaccagatgaccca
aaccttccaaagccatggaaagggttgattgatgggagcacaggtcttacttattactgg
aatcccgagacaaatatcactcaatatgaaaagccggctagtgcacctccaccagttcca
tctgctgtacctcatgtagacactgcatctcagactactgtgcagcatggacagcctgcg
gatgcttcacagtatcaacaacaatacatgaatcagttatctcagcagccaggacagttt
cagggtccaatttctcaacagcaaggacattatcaaggtcctcaaactgcatcaaatcct
cagcagcagcctgcacagattcctccttctgggcagcagcagtatgtccattatggacaa
ggaatgcctcaaagaagctcacaaatagggctagcacctgtgcaacagggacaagcaacg
cagccgcagcactatgggccgccaatgacgcagcaaagtggccaacagttattgccacat
caaggatcgcagatggtgcaacatcccattcagcacaattctcagcagttagggcagcag
gcaccattgcatcagggtccgacagcagcacaatcccaagggcttcattatatgccccac
caaatgcaatatgctccataccaacaaccacctatgcatccacaggggcagcaaaatgta
caacttcatcctcaggtgaccccacagggacctcaattctcatatcaacaggataataga
aatgctcagcaagatgattctgattatcctaagcaaactgggagctcaatttctcaggtt
gagcaaagtggacacacagctggtcatggtccaccgtctatgaatacttctaatcatgga
ttgcaaggaagccccctctctggtcaatcacagccttatgcttcctcagtgcatatgcat
cagccgcacccaaatgttaaagtgccagagactcggagtgatattgccaatcagcatcct
tccacttatcaaaatcaaatgggtcaatcctttatgcagggtcagcagcatggcctgcct
cctgttgcgcgaaatatgggctatgatgaaagccaacaactgcgatctgggaaaggatat
gactttaatgctagcaaggattcaccattggttccgcctctccaccctaatcttgctgcg
gtacctatgccaaggaatcagcaggactcaaggatgggtgctttctcgcatcaaaatgtg
ccacctggtcatgacggtttgaataagataagtgcaccaggtatgcatagcatgtataat
catgcaaatgttgatccacctatccctaatcaaccttttatgaggccatctccgatgatg
cctggttccaccgatgctttaaatatttcttccgttgaggcttaccgacagcaacacgaa
gtgactgcgacgggcgagaatgttccggccccatttatgacttttgaagccactggtttt
cctcctgagatactgcgagagatgcattctgctggatttgcttcaccaacaccaattcaa
gctcaaacatggcctattgcactacaaaacaaagacattgtggcaattgcaaagacaggt
tcagggaaaacattgggctatttaatgcctgcctttatgcatcttaggcaacgaagaaat
aattcacgaaatggtccaacagtcttggtcttggctcctactcgtgagcttgctacacaa
attcaagatgaagctataaaattcggaagatcttccaggatttcttgcacgtgcttgtat
ggcggagccccaaagggcccacagctagaagaattacgccgtggagctgatgtagttgtg
gcaacacctggtcgtctcaacgatattcttgagacgagaaatattgatcttcgacaagtt
tcactgcttgttcttgatgaagcggatagaatgttagacatgggttttgagcctcaaatt
cgcaagattgtgaatgagattcctcctcttaggcaaacactcatgtacacggcaacttgg
ccaaaagaagtcaggaaaattgctggtgatttgctccgtagtccagtgcaggtgaacatt
ggcagtgttgatgaacttgctgcgaacaagtctattacgcagtatgtggaaatggtgcca
caattcgagaaacaaagacgtttggagcagattcttagatcccaagagaggggttccaag
gttattattttctgttcaacaaagaagttgtgtaatgatcttgcacgaagtattagtcgc
agctttcctgctgctgcaatacatggggacaaatcacagagtgaaagagactatgtcctg
aatcaatttcgctctggaaaatcaccaattttagttgcaactgatgttgctgctagaggc
cttgatataaaggacattagggtggtgataaactacgattttccaactgggattgaagac
tatgtccatcgaatcggcaggactggcagggcaggggcaacaggagtggcttacaccttc
ttctctgaacaggattggaagcatgctgctgatcttgttaaagtgctggagggagctaat
cagcaggttcctgctcaggtgagagaaatggcacttcgtggtggtcatggtttcaataaa
gatcgaaatattatgaataggtttgatactggccctggccctgcttttggtggtggtggg
cgttgggattctggtggccgtggtggaaacatgggagatggtggtcgtggtggcatgaga
gacagagatagttcctttggaggtcgtggtggttttggcgcttctcgtggtggtagtggc
atgagaaatgatgggtttggggggcgtggcatgagagagagagatgattatggacgtggg
ggacgcgttgataatggtgggcgtggatacaggggaggacgaggatttggcgggcccggt
ggatatggaggtcgatccagggatgattatgggtcaaatgagaggttcaataatagagat
gttggattcggacgtggccgtggtagggggcggtttgataacaggagggatgctacgagg
agtagaggaaggagttacagtcgcagccctgagaaggttcgtacatggggaggttatagc
agaagcgtaagccgcagccgtagccgtagccgaagccgaagccgaagccgtactcctcgt
cgaagttatagccgaagccgaagtcgtggtcgtaccaggagccgcagccgtagccgcagc
cgcagttatgatggttatgagaggcctactaggcgagaacgtcgtccatcgggatttgat
atgcttccagaaacagataatcatcaacagaaggatttagcagcaactatagttgggcct
cctgctgtaccacaaattactaatagcaattctttatctgtatatgatgctggggcaaag
cttgatgagaaagatcatattgttcattcaggtgtggtcaatcaatctgatgattaa
DBGET
integrated database retrieval system
