Amaranthus tricolor (tampala): 130826033
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Entry
130826033 CDS
T09367
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
Organism
atri
Amaranthus tricolor (tampala)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
HDA2-3
Myb_DNA-binding
STAT6_C
Motif
Other DBs
NCBI-GeneID:
130826033
NCBI-ProteinID:
XP_057547488
LinkDB
All DBs
Position
10:607087..623391
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AA seq
2079 aa
AA seq
DB search
MASKGPRSKLDHESRARRQKALEAPKEPRRPKTHWDHVLEEMIWLSKDFEAERKWKLAQA
KKVALRASRGMVDQATRGERRIKEEEQRMRKVALNISKDVKKFWTKIEKLVLYKHQLEFD
SKKKKALDKQLEYLLGQTERYSTMLAENLLGTANSCPSLQPLIEEKNCNSQPIETDEKKI
DGDAMDKDASTELLSGAKSDEEMSLDAMEADDEYGVSSEDELEDDEQTIDEDEALITKEE
REEELAALQNEVDLPLEELLKRYSMNEVMLRSVLLQESHEEVDRVQVNGESLPNQLGVTM
ENAKEVITDVETDKLVVLKGDIDQSSEGKSNSPSKATSDVSKVEAYPSPKSSKTLLNSEF
VDAGYDFIDDQADDEFVIATAEEKDDETTLEEEEELAKAESRTSEDEIALLQQESEMPLE
ELLRRYHMEHSNLGSSDDESDYCSSHSDLESSPKNQVLEEEEKDNKDTVVAEDVIGETKN
NSLAPSEEAVVGHVEEDSQRDSIIADAAAAARSAQPTGNTFSTTNVRTKFPFLIKHPLRE
YQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVML
NWETEFLKWCPAFKILTYFGSAKERKYKRQGWMKPNSFHVCITTYRLVIQDSKIFKRKKW
KYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSH
QEFKDWFCNPISGMVDGQEKVNKEVIDRLHNVLRPFILRRLKRDVEKQLPMKYEHVINCR
LSKRQRNLYEDFIASSETQATLASSNFLGMLNVIMQLRKVCNHPDLFEGRSIISSFDMEG
IEMQLSSTVCSMLSPGLFSSTDLSGLGFRFTHLDFSMVSWEYDEVQSIATSPALIEQRLS
HDHLDVIRPRFKHGNKVYGTNIFEEIQKAIREERLNEKKQRAASIAWWNSLRCQKKPLYS
RTLRANLTVEHPVYDIQCRKENPVCFDYSSKLADIILSPVERFQKMIDQVESFMFVIPAA
RAPPPVCWSNKSGSSVFIDPGYKGKCSQHLLPLLTSIRPAVVRRQLYFPDRRLIQFDCGK
LQQLAILLRRLRSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTPPEQRQTLMQR
FNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIY
RLVSESTIEENILKKANQKRALDNLVIQSGGYNTEFFKKLDPMELFSGHRLAPSKERGKE
KNAEDGAEVPVSNDDIEAALKNAEDEADYMALKKVEEEEAVDNQEFTEEAIERLEDDDLG
NEDIVKPNESTDQNALVTASNIENMVISNGNDLDREKALTLACNEDEVDMIADVKQMAAA
AAAAGQEVLLFENQLRPIDRYAMRFLEVWDPIIDKDAIDHQVEFEEREWELDRIEKLKED
MEAEVDDDDEPLVYEKWDAEFATQAYHQQVEALAQHQLMEELENKAKELENVEDVNGDFV
KVEASGGSKTKSKKKKAKKAKFKSLKKHSLSLASKSMNEDDLVEYVSSDYEDDSRELAAC
AEANPSSLILRLKRKKDETTTAEEGTSTKSKSKKSKKTALVMKLPAAESNTLRILHEESR
DTRSCEDGTLDLDLKPSNRGKMGGKLSITTLPMKRIYTIRPEKCKKKGNLWSNDCFPSPD
SWLPLEDAVLCALVHEYGPNWSLVSDCLYGIEAGGYYRGRFRHPTLCCERFRELVSKFNT
VADALNNEKTSTAAPAKGLLRVTEDHLRVLLDAAMEQQDSELLLQRHFTALLTTVWRMNS
STDQQKGRSAPHSNLYPSIRLFGKSVNPTAQNSSTGLSKKKFNLVQCGRLLVVALHDAES
VKTAAPSHMEEDLPDTEKLDVTVEFRKDRGESDDSTVGFPSVVSVSIPGLDPLPPVKPPS
EENQLRSTQQVAESRFRASSSACLDGFHGWASSAFPVGESRNRLSVRSSSSGKHKLGPGE
SGRSSKSKLRKLAESAEIHPPFAEPLLQVPPNIPPIATYSAPDSYPSGLLASHFEDHLIN
PMEETPLCTNNHEMVPHWYDPHFISDLDDCSLTDYTDIG
NT seq
6240 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgaaaggcccgaggtctaaacttgatcatgaatcgagagctcgaagacaaaag
gctcttgaagctcctaaagaacctcgtcgcccaaaaacacattgggatcatgttctagag
gagatgatttggttgtcaaaggactttgaggcagagaggaagtggaagttagcgcaggca
aagaaagtagctttaagagcaagcagaggcatggttgaccaggcgacaaggggagaaagg
agaataaaggaagaagagcaacgcatgaggaaagttgcacttaatatctcaaaggatgtt
aagaaattctggactaaaatagagaagctggtgctctataagcatcaattggagtttgat
tctaagaagaagaaggcactcgataagcaactggagtatctcttgggtcaaactgaaagg
tattcaactatgctggcggaaaatctcttgggaactgcaaactcctgcccttctctgcag
ccacttatagaagagaaaaattgcaactctcaaccgattgagacagatgaaaagaaaata
gacggggatgcaatggataaggatgcatcaacggaattgctttctggggctaaatcagat
gaagagatgagtttagatgctatggaagctgatgatgaatatggtgtatcatctgaagat
gagttggaagatgacgagcagactatcgacgaagatgaagctctaataacaaaggaagaa
agggaagaagaattggctgccttgcagaatgaagtagatctacctctagaggagctactc
aaacgttattctatgaatgaagtaatgctcagatctgtgctgttgcaagagtcccatgaa
gaagttgaccgtgttcaggtcaatggtgaaagcttaccaaatcaacttggcgtaactatg
gaaaacgccaaagaggttatcactgatgttgaaactgataagcttgtggtgcttaagggg
gacattgaccagtcatcagagggaaaaagcaatagtccgtctaaggcaactagtgacgta
tctaaagttgaagcctatccgtcccctaagtcctcaaagaccttgttgaattcggaattt
gtagacgcaggttatgattttattgatgatcaggcagatgatgagtttgttattgccaca
gcagaagagaaggacgacgagacaaccttggaagaggaggaggagttggcaaaagcagag
tcgagaacgtctgaagatgaaattgcgttactgcagcaagaaagcgagatgcccttggag
gaactgcttagacgctaccatatggaacattccaatctgggctctagtgatgatgaatca
gattattgttcttctcactctgatttagagagttctccgaagaatcaagtgcttgaagag
gaagaaaaggataataaggatactgttgtggctgaagatgttattggggagacaaaaaat
aattcgcttgcccctagtgaagaagctgttgttggtcatgttgaagaggacagtcaaaga
gattctataattgctgatgctgcggctgctgcgagatccgcccaaccgacggggaacacc
ttctccacgactaacgtgcgaacaaagttcccctttcttattaagcaccctcttcgagag
tatcagcatattgggcttgactggcttgttaccatgtatgagaaaagactcaatgggatc
cttgccgatgagatgggtctcggaaagacaatcatgacgattgcattgcttgcacacctg
gcatgtgagaagggaatatgggggcctcatctcattgttgttccaaccagtgtcatgctt
aactgggaaactgagtttttaaaatggtgtccggcattcaaaatcttaacttactttggg
agtgctaaggagcgcaaatataagaggcaaggttggatgaaacccaattctttccatgtg
tgcataactacttatagacttgttatccaggattcaaaaattttcaagcgtaagaagtgg
aagtatttgatattagatgaagctcatttgataaagaattggaagtctcagcggtggcaa
actcttttgaatttcaattcaaagaggcgcatcttgttgacgggtactccgttgcaaaat
gatctaatggaactgtggtctttaatgcattttttgatgccccatatctttcagtctcac
caggaattcaaagattggttttgtaatcctatatcaggaatggtagatggacaagaaaag
gtgaacaaagaagtgatagatcgtcttcataatgtattaagaccttttattctgcgtcgt
ctgaaaagagatgttgaaaaacagcttcctatgaaatatgagcatgtcataaactgcaga
ctctcaaagagacagaggaatttgtatgaagatttcattgctagttctgaaacccaagct
actctggctagttccaacttccttggtatgctaaatgtcataatgcaactacgtaaagtt
tgcaatcatcctgacttgtttgagggccgttcgattataagttcttttgacatggagggt
atagagatgcaattgagttctacagtgtgttcaatgctttcgcccggtctattttcttca
accgatctttctggcttgggttttcgttttacacatctagatttcagcatggtatcttgg
gagtatgatgaagtccaatctattgccacttctcctgcattgatcgaacaacgtcttagt
catgatcatctagatgttattaggcctaggtttaaacatgggaacaaagtttatggaaca
aacatatttgaagagattcagaaagcgatacgtgaggagagattaaacgagaaaaaacag
cgggcagcttccattgcatggtggaattcattgaggtgtcagaaaaagcctttgtattct
agaaccttgcgtgcaaatctgactgtagagcatcccgtttatgacatacagtgccgtaag
gaaaatcccgtgtgttttgactattcctcaaagcttgcagacatcattttatcacccgtg
gaacgattccagaagatgatagatcaagttgaatcttttatgtttgttatcccagctgca
cgagctcctccacctgtttgttggtccaataaatctggaagttctgtttttattgatcca
ggttacaagggaaaatgctctcaacatttactgcctctattgacttctatacgtcctgct
gttgttcggaggcagttatattttcctgacaggcgcttgatacagtttgattgtggaaag
ctccagcagcttgctattctacttagaagattgagatcagagggtcatagagcattaatc
ttcactcaaatgacaaaaatgcttgatatattggaagctttcataaatttgtatggttat
acctatatgcgcttggacggatctactccaccggagcagaggcaaactttgatgcagcga
tttaatacgaatcccaagatatttttgtttatcttgtcaacacgtagtggaggtgttgga
ataaatcttgttggggcagatacggtgatattctatgacagtgactggaaccctgccatg
gatcaacaagctcaagatcgttgtcatcgtattggacagacccgtgaagtccatatttat
cgtttagtaagcgagagcaccattgaagaaaacatcttaaagaaagcaaatcaaaaacga
gctcttgataatctagtgatacagagtggtggctacaatactgaatttttcaagaagctt
gatccgatggagctgttctcgggacatagattagctccctcaaaagagagaggcaaagag
aaaaatgcagaggatggggctgaagttcctgtttctaatgatgatatagaggctgcttta
aaaaatgctgaagatgaggcagattatatggctcttaaaaaggttgaagaggaagaggct
gtcgacaaccaggaatttaccgaggaagccattgaaaggttggaagatgatgacttggga
aatgaggacattgttaaacccaatgaatctacggatcagaatgcgttggttactgcttcc
aatatagaaaatatggttatctcaaatgggaatgatctcgatagggagaaggctctcaca
ttagcatgcaatgaagacgaggttgacatgatagccgacgtcaagcagatggcagcggct
gctgctgcagcaggacaagaagttctattgtttgagaatcaattgcgtccgatagatagg
tatgcaatgcgtttcttggaggtttgggaccctattatcgataaggatgcaatagatcat
caagttgagtttgaggagagagagtgggagttggatcgtatcgagaagttaaaagaggat
atggaggcagaagttgatgatgatgatgagcctcttgtgtatgagaaatgggatgcagaa
tttgctactcaagcttatcatcagcaagttgaagctttagctcagcatcagttgatggaa
gaactagaaaacaaagccaaggagctggaaaatgtcgaggatgtgaacggcgattttgtc
aaggttgaagcgtctggtggtagtaaaactaagtctaagaaaaagaaagcgaagaaagca
aagttcaaatctttgaaaaagcactcgttatccttggcttcaaaatctatgaatgaggat
gatttagtagaatatgtgtcgtcagattatgaagatgattctcgagagctggctgcttgt
gccgaggctaacccatctagtctcattttaagattgaagaggaagaaggatgaaacgact
accgctgaagaggggacgtccacaaagagcaagtccaaaaaatccaagaaaactgctctc
gtaatgaaattaccagctgcggaatcaaacactttaagaattttacatgaagaatcacga
gatacgaggtcatgtgaagacgggactcttgatttggatctgaagccttctaataggggt
aagatgggtgggaaactttcaatcactactctgccaatgaaaagaatttatactattagg
cccgagaagtgtaagaaaaaggggaatttgtggtcaaacgattgtttcccgtcgcccgat
tcctggctgcctctggaggatgcagtattatgtgctcttgtacacgagtatggtccgaat
tggagcttggttagcgactgtctttatgggattgaagctggtggttattacaggggcaga
tttcgccatccaactttgtgctgtgaaagattcagggaacttgtctcaaaatttaatact
gttgcagatgctctcaacaacgaaaaaacaagtacggctgcacctgcgaaagggttactg
agagttactgaggaccaccttcgagttctgttggatgctgcaatggaacaacaagatagc
gagttacttcttcaacggcatttcactgctcttctcactaccgtttggaggatgaattcc
tccacagatcagcaaaaaggccgttcagctccccatagtaatctttatccgagcataagg
ctatttggtaaatccgtaaatccaactgctcaaaattcaagcacagggttgtccaagaaa
aagttcaatttggttcagtgcggcaggcttctagttgtagcattgcatgatgctgaaagc
gtcaaaacagctgccccctcccacatggaagaggatttacctgatacagagaagttggat
gtcacagtagagttcagaaaagacagaggtgagagtgatgactccaccgttggttttcct
tctgtagtatcggtttcaatacctggcttggatccgcttccacctgttaagccgccttca
gaagagaatcaacttaggtctactcaacaagtggcggagagtcgtttcagggcttcctct
agtgcatgtctagatggttttcatggctgggcatcatctgcatttccagttggtgaatcc
cgcaaccgattgtcagttagatcatcctcatcagggaaacacaaactgggtccaggtgaa
tccggaagatcatccaaatcaaagctcagaaaacttgcagaatctgccgagattcatcct
ccatttgcagaaccattgctccaagtaccgcccaacattccacccattgctacatactct
gctcccgactcatatccttcagggctcctagctagtcattttgaggatcatttgatcaat
cctatggaggaaacccctttatgtacaaataatcatgagatggtcccacattggtacgac
ccccatttcatttcggaccttgacgattgctcattgactgattatactgatatcgggtaa
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integrated database retrieval system
