Amaranthus tricolor (tampala): 130826088
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Entry
130826088 CDS
T09367
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130826088
03036 Chromosome and associated proteins [BR:
atri03036
]
130826088
Transcription machinery [BR:
atri03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
130826088
Chromosome and associated proteins [BR:
atri03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
130826088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
HTH_44
Spt6_S1
HHH_9
Tex_central_region
HHH_3
SH2
S1
Motif
Other DBs
NCBI-GeneID:
130826088
NCBI-ProteinID:
XP_057547604
LinkDB
All DBs
Position
10:complement(1033041..1042954)
Genome browser
AA seq
1775 aa
AA seq
DB search
MVGRAVVFDDEEELDAQELDDGEEHDDGEGIGGGDDDEDEDEEGQDEFENDGFIVDGDEE
EEEPQEDDDEERHRKKRKKKRESFELDDDDYELLLDNNVKVSRKETKLKRLKKADTDVGH
SDEDEFNGTRRSGRTAEEQVKRSLFGDDDGPVEDIPEDDEQIEEDLDLNDDEDDMADFIV
SEDEVDVDGLPVRKKPQKKKHRQAPGVPSSALQDAHDIFGDVDELSDMRHRLNIERDGYD
DSGQWKDKKLEDEFEPIILAERYMTDKDDRIQEIDIPERMQIFEECTGPPPMDAEFIEDE
AKWIKKQLESGQVPGLVNMTLGEDVEDHIRNFLKFTHVQKLDLPFIAMYRKEDIFSLLKD
PEIGEDVSHDKPTLRRNKVLWVVHELDRKWLLLQKRKSAIQAYYNKRFKEESCRIYDETR
LSFKQDLFKSIVEALRLAESEREVDDVDSKFNLHFPPGEAGVNEGQYRRPNRKSLYSMSN
KAGLWEIASKFGYSSEQFGALISLETRVDEPEDPKETPEDFASNFTCAMFDSPQAILKGA
RHMASVEISVEPRVKKHFRSIYFENAVVSTCPTSDGNAIIDSLHQFASVKWLRNKPLNKF
EDAQWLLIQKAEEEKLLQVNIKLPEENLKKLISDSEEQYTSCGVSKLAQQWNEQRKLILK
DAILDFILPTLEKEARLLLTSRAKSWLLMDYGKHLWDKVSVAPYPRKESDLNSDDEAAPR
VMACCWGPGKPPTTFVMLNSFGEIIDVLEAGSISLRSQNVTDQQRKKHDQLKLLKFMTEH
QPQVVVLGAVGLSCTRLKDDIYEIVFKMVEENPRDVGNELDGLSVFYGDESLARLYENSR
ISSDQNPGHKGVVRRAVALGRYLQNPLAMVAALCGPGREVLSWKLNPLENFLNADEKYTV
VEQVMVDVTNQVGLDLNLAVNHDWLFAPLQFVSGLGPRKAAFLQRSLARAGAIVTRKDLL
TTHGLGRKVFISAAGFLRIRRSGLAVSTSQFVDVLDDTRIHPESYALAQEMAKDIYSEIV
KDDNFDDDDIEMAIEHLRDRPSALKSFNVDAYAKDTDRLSKIETLHAIKLELIQGFQDWR
KAYEEPNQDEEFFMISGETDTTLSEGRVVQATVRRVQPQRAICGLESGLTGMLMKEDFSD
DSTDCDMTEKLREGDIITCKIKSIQKNRYQVFLTCKENDMKNVGQQNIENQDPYYQEDRS
SLPSEQGKARRDKELAKKHFKPRMIVHPRFQNITADEAMEHLADKEPGNSVIRPSSRGPS
YLTLSLKVYDGVFAHKDIIEGGKEHKDLTSLLRIGKTLKIGEDTFEDLDKVMDRYVDPLV
THLKAMLNYRKFRKGTKAEIDEVLRIEKSDNPTKIVYSLGISHEHPGTFILTYIRSSNPR
HEYIGLYPKGFKFRKRMFDNIDKLVGYFQKHIDDPIHESQSIRSVSAMVSMQTGDSSGVG
GWGGSGGNDGGWRGSSDRDHSGTGRNDDRNGGRGRGRGRGRGRGRGGRGSYDGNRDSGDS
TYGQKWGSDDRDGGSRDGGNSTYGQKWDSDNRDSGNSSKWGSDANNNKDGNNSSWGSFPG
AKVHNAPGEEAFPGGWGSSGGGGSSSGGGWGNSAAGGKGGGNDGGWAGSGGSEAGSISAG
NDGGWGGSGGSGARGKGGSNDGGWGGSVGKGASNDEGWGGSVGKGASNDGGWGGSGGSVA
GSKGGGSDGGWGGSGGSGGGGGGWGGSGGSGGGGGGWGGSGGSGGGGGGWGGSGGSGGRG
GSNDGGDSGKDSGWGSASGSKNNSKGWGGSGGGGW
NT seq
5328 nt
NT seq
+upstream
nt +downstream
nt
atggttggaagagctgtagtttttgacgatgaagaggagctcgatgctcaagaactcgat
gatggcgaagaacacgatgatggggaaggaattggtggcggtgatgacgatgaagacgaa
gacgaagaaggacaggatgagtttgagaatgatggttttattgttgatggcgatgaagaa
gaggaagaaccccaagaagatgatgatgaagaaagacatagaaagaagaggaaaaagaaa
agggaatcctttgaacttgatgatgatgattatgagcttctactggacaataatgtgaaa
gtttctcgtaaagaaaccaagttgaaaaggttgaagaaggctgatactgatgttgggcat
tctgatgaggatgagtttaatggtacacggagaagtggaaggacagcagaggagcaggtc
aagcgttccttatttggtgatgatgatggacctgttgaggatatcccagaagatgatgag
cagatagaagaagatctagacttgaatgatgacgaagatgacatggctgattttatcgtg
tccgaagatgaagttgatgttgatggattgcctgttagaaagaagccgcaaaaaaagaag
catagacaagctcctggagttccatcatctgcactgcaggacgctcatgatatatttgga
gatgtggatgaactttcggatatgcgtcatcgattaaatattgaaagagacgggtatgat
gatagtggtcaatggaaggataaaaaacttgaagatgaatttgaacctatcattcttgct
gaacggtatatgactgacaaggatgatcgaatccaggagattgatataccagaaagaatg
cagatatttgaggagtgcactggccctcctcctatggatgctgaattcattgaagatgaa
gccaagtggatcaaaaagcagctagaatctggtcaagttcctgggcttgttaatatgacc
cttggagaagatgttgaagatcacattagaaattttctgaaattcacacatgtgcagaaa
cttgatcttccttttattgctatgtaccgcaaggaggacattttcagtttgttgaaggat
cctgagataggtgaagatgtcagtcatgataagcctactttaagaaggaacaaggtgctt
tgggttgtccatgagttggatagaaaatggttgcttcttcaaaagcgaaagagtgctatc
caggcctactataataaaagattcaaggaagagtcttgcagaatatatgatgagacaaga
ctgagttttaagcaggaccttttcaaatcaattgttgaagccttgagacttgcagaatca
gaaagggaagttgatgatgttgactcaaaatttaatctgcatttcccacctggtgaggct
ggggtaaatgaggggcaatatagaagacctaatcgaaaatcactttatagcatgtccaac
aaagctggtttatgggagattgccagtaaatttggctacagttctgagcagtttggcgcg
ctgatctccttggagacaagagtggatgaacccgaggatccaaaggagactcctgaggat
tttgcctcaaactttacctgtgcaatgtttgattcgcctcaagctattctaaaaggtgct
cgacacatggcatcagttgagataagtgttgagcctcgtgtaaagaagcattttcgtagt
atatactttgagaatgcagtggtctcaacatgtccaacatctgatgggaatgccattata
gattctctccatcagtttgcaagcgtcaagtggttacgcaacaagccattgaataaattt
gaggatgcacagtggcttcttattcaaaaggctgaagaggagaagctacttcaggtcaat
attaaattgcccgaggaaaaccttaagaagctgataagcgattctgaggagcagtatact
agctgtggtgttagcaagctagcacagcagtggaatgagcaaagaaaactcatattaaag
gatgcgattttggattttatactgccaacattggagaaagaagctagattgttgctgact
agcagggctaagtcatggttgctcatggattatggcaaacatctctgggataaggtttct
gtggctccatacccacgaaaggaaagcgatcttaactcagatgatgaagcagctccaagg
gttatggcgtgctgttggggtccaggaaagccaccaaccacttttgtgatgctaaattct
tttggcgagattattgatgtcctagaggctggatcaatcagtctgaggtctcaaaatgtt
acagaccagcagcgtaaaaagcatgaccaattaaaacttttgaaattcatgaccgagcat
caaccacaggtcgttgtcctgggtgctgtcggtctgtcttgcacccggctgaaagatgat
atctatgagattgtttttaagatggttgaagaaaatcctagagatgtgggtaatgaattg
gatgggctgagtgttttctacggggatgaatctttggctcgtctatatgaaaattctcgt
atttcatctgatcagaaccctgggcataaaggtgttgtgagacgagctgtcgcccttgga
cgctacctccagaatccattagccatggttgcagctctttgtggaccaggaagggaagtt
ttgtcttggaaactcaatcctttagaaaactttcttaatgccgatgagaagtatacagtt
gtggaacaggttatggttgatgtaacaaaccaggtggggcttgatctaaatctggccgta
aatcatgattggctatttgctccattgcagtttgtttctggtcttgggcctaggaaagca
gcatttttacagcggtcacttgctagagctggggcaatagtcacaagaaaagacttgctg
actacgcatggacttgggagaaaggtgtttattagtgctgccggttttttgcgtattagg
cgtagtggcttagctgttagtaccagccagtttgttgacgtgttggatgatacaagaata
catccagagtcctatgccttagcacaggaaatggcgaaagatatttatagcgaaattgtt
aaggatgataattttgatgacgacgatattgagatggcaattgaacacctcagagacaga
ccaagtgcattgaaatcatttaatgttgatgcatatgcaaaggatactgaccgtttgtct
aagatagagaccttgcatgcgataaagctggagttaattcagggatttcaagattggcgt
aaagcatatgaagaacctaatcaagatgaagagttttttatgatttctggggagactgat
actactttgagtgaaggacgagttgttcaagctacagttcgcagggtgcaacctcaaaga
gcaatatgtggcttagaatcaggattaactggtatgcttatgaaggaagatttttcagat
gattcgacagattgtgatatgactgagaagctgcgtgaaggtgatattatcacttgtaag
ataaaaagtatccaaaagaacagataccaggtgttcttgacttgcaaagagaatgacatg
aagaatgttgggcagcaaaatatagagaaccaggacccatactatcaggaagaccgcagc
agcttaccaagtgaacaaggcaaggctcgcagagacaaggagcttgcaaagaagcatttc
aagccgaggatgatcgttcatcctcgttttcagaatataactgctgatgaagcgatggag
catttggcagacaaggaacctgggaatagtgttattcgtccaagttcccgtggtccatcg
tatttgacattgagtctaaaggtgtatgatggtgtatttgctcacaaggatataattgaa
ggtggaaaggagcacaaagatttaacaagcttgcttcgaatcggtaaaactctgaaaatt
ggagaggatacttttgaggatctggataaggtcatggaccgttatgttgatcccttggtt
acacatctgaaggcaatgctgaactatcgcaagttccgaaaagggacaaaagctgaaatt
gatgaagtccttagaattgagaagtcggataaccctactaagatagtttatagtttggga
atttcacatgagcatcctggcacatttattcttacatacattcgaagttcaaatccccgt
cacgagtatattggtctataccccaagggattcaaattccgcaagaggatgttcgataat
attgacaagcttgtaggatattttcagaagcatattgacgatcccatacatgaatcacag
tcaattcgatcagtttctgctatggtgtcaatgcaaactggtgattcctctggagttggt
ggatggggtggctcaggcggcaacgatggtgggtggcgaggatcttctgatagagatcat
tctgggacagggcgtaatgatgacagaaatggaggccgaggccgtggtcggggtcggggc
aggggccgtggccgtggtggtcgaggctcatatgatggaaatagggatagtggtgattcc
acctatggacagaagtggggctcagatgacagagatggtggaagcagggatggtggtaat
tctacttacggacagaagtgggactcggataacagagatagcgggaacagttccaagtgg
ggttcagacgctaacaataataaagatggtaataatagtagttggggaagctttcctggt
gctaaagtccataatgctccaggtgaggaagcttttcctggtggatggggttctagtgga
ggtggcggtagtagtagtggtggaggttggggtaatagtgcagctggaggcaaaggtggc
ggtaatgacggaggttgggctggatctggtggtagtgaagctggaagcataagtgccggt
aacgacggaggttggggcggatctggtggtagtggagctagaggcaaaggtggcagtaat
gacggaggttggggtggatctgtaggcaaaggtgccagtaatgacgaaggttggggcgga
tctgtaggcaaaggtgccagtaatgacggaggttggggtggatctggtggtagtgtggct
ggaagcaaaggtgggggaagtgacggaggttggggtggatctggtggtagtggtggaggt
ggtggaggttggggtggatctggtggtagtggaggaggtggtggaggttggggtggatct
ggtggtagtggaggaggtggtggaggttggggtggatctggtggtagtggaggtagaggt
ggcagtaatgacggcggtgacagtggcaaggattctggatggggttcagcttctggtagc
aagaacaactccaagggatggggtggcagcggcggaggtggatggtag
DBGET
integrated database retrieval system
