KEGG   Amaranthus tricolor (tampala): 130826426
Entry
130826426         CDS       T09367                                 
Name
(RefSeq) UBP1-associated protein 2C-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
atri  Amaranthus tricolor (tampala)
Pathway
atri03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130826426
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atri03019]
    130826426
   03041 Spliceosome [BR:atri03041]
    130826426
Messenger RNA biogenesis [BR:atri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     130826426
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     130826426
Spliceosome [BR:atri03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    130826426
SSDB
Motif
Pfam: RRM_1 RRM_7 MTBP_mid Cut8 RL
Other DBs
NCBI-GeneID: 130826426
NCBI-ProteinID: XP_057547997
LinkDB
Position
11:complement(12051855..12060648)
AA seq 394 aa
MDMDSSKKRKADENGNSFTSDQALISPSDSQPQTLTLEDARNLLKDFSHDELLNLCQNAV
VRHPDILSSARVIADTDVSRRKLFVRGLGPQTTTESLKSLFLSFGELDEAVVITDKNTGK
SKGYGFVTFKHFDGAVLALKQPSKKIDGRMTVTHLASAGRGPNGEDQATRKIYVGNVPYE
ISAEKLLDFFSAFGEIEEGPLGFDKQAGKTKGFAFFVYKTEDGARMSLREPMKMIDGHQV
MCKLAEDGKKGRVGGPNSVLSGEIGGLGGDRMSSSMNSQYGGGMNQYGSGLGPGLGGPVP
VGGVGPYSAPHSQPGPGSGDYYRMPPPHSSMGMPPSYQEGSGGYGLSGSGGVYGLSGSGG
GYMSQNHPPSQGPSQGPPQGPPSGVYHRMPPPYY
NT seq 1185 nt   +upstreamnt  +downstreamnt
atggatatggattcttcgaagaaacgcaaagccgacgaaaatggcaattccttcacctct
gaccaagccctaatttctccttccgattctcaaccacaaactctgactctagaagacgct
cgaaacctactcaaagacttctctcacgacgaacttctcaatctttgtcaaaatgccgtc
gttcgacaccccgatatcctctcctccgctcgtgtaatcgccgacactgatgtgtcccgc
agaaagctttttgttcggggtcttggtcctcagacgaccaccgaatcgctgaaatcgttg
tttttatcgtttggtgagcttgatgaggctgttgtgattaccgataagaataccgggaaa
tccaaaggatatggattcgttacgttcaagcattttgatggggcagtattggcgcttaag
caaccgagtaagaaaattgatggcaggatgactgtgacacatttggcatcagcgggacga
gggccgaatggtgaagatcaagctacgaggaaaatttatgttgggaatgttccgtatgag
atttcagctgagaaattgttggatttcttttctgcgtttggggagattgaagaaggcccg
ttagggtttgataaacaagctgggaaaacaaagggatttgcgttttttgtgtataagacc
gaggatggtgcgaggatgtcgttaagggaaccgatgaagatgattgacggacaccaggtt
atgtgtaagctggctgaggatggaaagaaggggagagttggtgggccgaactcggttttg
agtggtgagattggtggtttagggggtgataggatgtcgagttccatgaattcacagtat
ggtggtgggatgaatcagtatggttcgggtttgggacctggtttggggggcccagttcct
gttggtggtgttgggccgtatagtgcaccgcattcacagcctgggccaggttccggtgat
tattataggatgccaccgccacatagttcgatgggaatgccaccgtcgtatcaagaaggc
agtggtggatatggtctttcaggttctggaggtgtttacggcctttccggttctggtggt
ggttacatgagtcagaatcatcccccttctcagggtccttctcagggtcctcctcagggt
cctcctagtggggtgtatcatcgtatgccaccgccttattattga

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