Amaranthus tricolor (tampala): 130826683
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Entry
130826683 CDS
T09367
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130826683
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130826683
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130826683
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130826683
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
130826683
NCBI-ProteinID:
XP_057548235
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Position
1:39731371..39753058
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AA seq
846 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDNFEAEMEGLSVKKGKTRPPRLTHLETSISRHKA
HIMKLELILRLLDNDELSPEHVNDVKDFLEDYVERNQEDFDEFSDVDEFYSALPLDKVEA
LEDLVTMGQPGLAKGVKSQGGGTTTSVLSLKSSSNTSSSLASVTVPSSQLSAPILELDET
NSQDSNAETVPKTPPSKISVLSSSNPPTSQAATANTSAHLSASPSASASVPGTVSSRGIL
DSANPSLNIPNVSKEEDTLDFPGRRSSPALLDTAALNRGTGRGSISGQPVASVPLSSVST
VPSSGMTLGAVPLASEVAKRNIFGSDEMLSSGVPGRAFSSSVGPGMQWRPGGPFQSQTEV
GQYRGRAEIVPDQKEKYVQRLQQQQQGHSNILGMPRLVSGNSKPFSGQQQNQLLQQLNSQ
SSSISSQVGLGLGLQSSSLSTTSSAPVQHQPISIQQQALLAAKESSIEDQQHQNLPEDST
VEMAPSSGLSKNLMNDDDLKSPYVKDTGGASGALAESAQLTRDTDLSPGQPLQTSQSSGS
LGVIGRRSVSDLGAIGDSIGGTANSGGGHDHYYTMQMLEAAYFKLPQPKDSERARTYTPR
HPAVTPSSFPQTQAPIVNNPAFWERMALDNIGTDTLFFAFYYQPNTYQQYLAARELKKQS
WRFHRKFHTWFQRHEEPKLATDECEKGTYVYFDFHISNDDPNQGWCQRIKADFTFEYSYL
EDDLVV
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcaagtcgaaagttacagggtgagatcgatcgtgttttgaagaaggttcaagaa
ggtgttgatgttttcgacagcatctggaacaaggtatacgatactgataatgcgaatcag
aaagagaagtttgaagctgatttgaagaaggaaattaagaaattgcagagatatagagac
caaattaagacatggattcagtccagtgaaattaaggacaaaaaggttagtgcatcttat
gagcaggctttggtggatgcccgtaagcttattgaacgtgaaatggaaaggttcaaaatt
tgtgagaaggagaccaagacaaaagcattttcaaaagaaggccttgggcaacaaccaaaa
actgaccccaaagagaaggcaaaatcagagacaagagattggttgaacaatgtggtaggg
gagttagagtcccaaattgataattttgaggccgaaatggagggcttatcagttaagaaa
ggaaagacaagacctcctagactgacacacttggaaacttctatatctcgtcacaaggct
catataatgaaattggaattgatattgagactattagataatgatgagttaagtcctgaa
catgtgaatgatgtcaaggactttcttgaagattatgtggaacgcaatcaggaagatttt
gatgaatttagtgatgttgatgagttctatagtgccttaccattggacaaagtggaggct
cttgaagatcttgtgaccatgggtcaacccggacttgctaagggcgtgaagtcacagggt
ggtggcactactacctcagttctaagtcttaagtcatcatcaaatacatcatcctctttg
gcatcggtcacagttccatcctctcaactaagtgctcctattctggagctggatgaaaca
aattctcaggacagtaatgctgaaactgttccaaagactccaccttctaagattagcgta
cttagttcctccaatccacctactagtcaggcagctacagcaaacacttctgctcatcta
tctgccagtccaagtgcttcagcttctgttccggggacagtctccagtcgaggaattctg
gacagtgccaatccttctctgaatatcccaaatgtttccaaagaagaggacacattggac
tttcctggacggagatcgtcacctgctctcttagatactgcagcacttaatcgtggaact
ggtaggggcagcatatctggccaacctgttgctagcgtacctcttagttctgttagtaca
gtccctagcagtggcatgacgcttggtgctgttcctttggcatctgaagtagcaaagaga
aatatttttggatcagatgaaatgctttcaagtggtgttcctggcagagcattctcgtct
tctgtgggtcctggaatgcagtggaggcctggaggcccttttcagagtcagactgaagtg
ggacagtatcgtggaagagctgaaattgttcctgatcaaaaagagaagtatgtgcagaga
ttacagcaacagcaacaaggtcacagtaatattctcgggatgccaagactcgtgagtggg
aattccaaaccattctcggggcagcagcaaaatcaacttctgcaacagttaaattctcaa
agttcatcgatttcctctcaagtcggtcttgggctaggattgcaatcttctagtctaagc
actacgtcatctgcacctgtacagcatcaaccaatttctatccaacaacaggctctactt
gctgcaaaagaatcatcgattgaggatcagcaacatcaaaacttgcctgaggactcaact
gttgaaatggctcctagttctggactttctaaaaatttgatgaatgatgatgatctcaaa
tctccttatgtgaaggatactggaggtgcatctggtgcgctagcagaatctgctcaacta
acaagagatacagatctgtctcctggccaacctttgcaaacaagtcaatcatctggtagc
ctcggagttataggtcggagaagtgtctcagaccttggggcaattggtgatagcattggc
ggaacagccaactctggtggagggcatgatcattattacactatgcagatgctggaggct
gcatattttaaacttcctcagcctaaagactcagaacgagcaaggacttatacaccgagg
caccctgcagttactccttcgagctttccgcaaactcaggcaccaattgtcaacaatcct
gctttctgggaacgaatggctcttgataatattgggacagataccttgttctttgcattc
tactatcaaccgaatacatatcaacaatatttggctgcaagagagctgaaaaaacaatca
tggagattccatagaaaattccacacatggtttcagaggcacgaagaaccaaagcttgcc
actgatgaatgtgaaaagggaacctatgtctactttgattttcacatttccaacgatgat
ccaaatcaaggatggtgccagagaatcaaagcagacttcacttttgagtatagctactta
gaagacgatctagttgtataa
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