Amaranthus tricolor (tampala): 130826743
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Entry
130826743 CDS
T09367
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130826743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130826743
Enzymes [BR:
atri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
130826743
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130826743
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130826743
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
DUF2145
DUF3567
Motif
Other DBs
NCBI-GeneID:
130826743
NCBI-ProteinID:
XP_057548292
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Position
11:complement(13844301..13864243)
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AA seq
576 aa
AA seq
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MDHERGVELRCESIPIFSGSDDPKNVIFFHRIPEQGTGIQHADLRNCSMHSNVVATVQCI
DCVNNGMPIQYSYHCSNKCYQDAWMKHIMYHQYRNDNNIFNEDTKKLGKIKGYKSWPPAD
MVSWFDEKLIVVLPPGGEWVNRLGSLNGLIPFSDGVGFSFQLQSSSLYQPELSSCGKEIF
VTDPIIQRLKLSPRSIVWLPDSAEQEKLEATTKVAIAENINILTYNILSDIYAYANKYPS
CPQWALTWEYRRKNLLDEIMLYDADILCLQEVQSDHFKNFFKPELEKYGYSAVYKKRIRE
VYTGNGYTTDGCAIFFRNHLFRHIISYELEYSKTALSLMGKLDPIMRNQAGVRVIKDNVA
LVVILEMVDNAAENASPFSRLCVVNTHIYAGRGFPDVKLLQVSDLINEIEKIIDPRMPLF
ICGDLNSLPGSDPYVLLTKSMVNPNSTDTTDPLHIFERLKLQHSMRLASAYASAYLKAVN
DSEGKTMITMDPKTHEPFFTSLNQSRGSTLDYIFYTEDSLEVKGILELPNLMSVATLPTP
FWSSDHIALLGVFKITKPFIQWNNALRLQGANDGMS
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atggatcacgagaggggagtagaactccgttgtgagtctataccgattttttccggctcc
gatgatcccaaaaatgttatttttttccatcggattccggagcaaggaactggcatccaa
catgcagatttgcgcaattgttcgatgcacagcaatgttgtagcaactgtacaatgtata
gattgtgtaaacaatgggatgcctatccagtatagttatcattgctcaaataagtgctac
caagatgcatggatgaagcacattatgtatcatcaatacagaaatgacaacaatattttt
aatgaggatactaaaaagttgggaaagatcaagggatataaatcttggccacctgcggat
atggtttcatggtttgatgaaaagctaatagtggttttaccacccggaggggagtgggtt
aacaggttgggctctttaaatggtttgataccattttctgatggtgttggctttagtttc
cagctgcaatcttcaagcctttatcaaccagaattgtcttcgtgtggaaaagagattttt
gtgacagaccctatcattcaaaggctaaagttatcacctcgttctatagtttggcttcca
gattcagcagagcaagaaaagttggaggctacaacaaaggttgctatagctgaaaatatt
aacattctaacttataacattctgtcagatatatatgcttatgcaaacaaatatccttcc
tgtccgcaatgggccttgacatgggaataccgccggaaaaatctgcttgatgaaataatg
ctgtatgatgcagatattttatgccttcaagaggttcaaagtgatcactttaagaatttt
ttcaagccagagctggaaaaatatggctactctgctgtctacaagaaaaggattagagag
gtatacacaggtaatggctacacaactgatggatgcgccatatttttccgcaatcactta
tttaggcacatcatatcatatgagcttgagtacagcaaaactgcattgtcactgatggga
aaactggatccaatcatgagaaatcaagctggagttcgtgtgattaaggacaatgtagct
cttgttgtcatattggagatggtggacaatgctgctgagaatgcttcacctttttctagg
ctttgcgtggtcaatacacacatatacgctggcaggggtttcccagatgtaaaattactc
caggtttctgatcttattaatgagattgaaaagattattgacccaagaatgcctctcttt
atctgtggggatttaaactctcttcctggaagtgatccttatgttctacttacaaaaagt
atggtgaatcctaattcaacagacacaactgatccattacatatatttgagcgtctcaaa
ctccaacattcaatgagattggcaagtgcatatgcatctgcatacctcaaggctgtcaat
gatagcgaaggaaaaacaatgatcacaatggatcctaaaacacacgaaccgttttttacc
agtttgaatcaatcccgtggaagtactctggattatatcttttacacagaggatagcttg
gaagttaaaggtattttggagctcccgaacttgatgagtgtggctacacttcctacccct
ttctggtcatcagaccatatcgctctattgggagtttttaaaattacaaagccattcatt
caatggaacaatgctctaagattgcagggtgcaaatgatggtatgtcttga
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