Amaranthus tricolor (tampala): 130826930
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Entry
130826930 CDS
T09367
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
atri03016
]
130826930
Enzymes [BR:
atri01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
130826930
Transfer RNA biogenesis [BR:
atri03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
130826930
Prokaryotic type
130826930
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF3176
OCIA
Motif
Other DBs
NCBI-GeneID:
130826930
NCBI-ProteinID:
XP_057548544
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All DBs
Position
11:complement(18574612..18583231)
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AA seq
534 aa
AA seq
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MAVLWSLRLPLTTPWKNGCSYANLKLFSSPSSSSFFHHKTRLNILLSHYFIASLSSSLST
SAQTHLAIPVQELITSSKWEAFRKKKVAMRVGYVGSNYKGLQKQREDNIRTIEEALEIAL
YKAGGIRDSNFGNLNKIAWARSSRTDKGVHSLATTISLKMEIPEYAWENDPNGVVLANHV
NMHLPDDIRVFSILPSQRSFDPRRECHIRNYSYLLPAEIIGVTSHSTDAEIDYNIQDFNG
ILNCFEGEHPFHNYTARSNYRRRPTKGRANRRHKSPNKLPSVEVEENHTDCQSSVHEEDA
LTDEESVTNLSDASVDELLDSEVGHECESGTRTPTEVRFARWLHERDEADSLSSAHWRKI
FQCSCSKLEQSHGMDFVEISICGESFMLHQIRKMVGTAIAVKRGLLPRDILKLSLNKFSR
IILPLAPSEVLLLRGNDFRLRKLPGNKKRPEMHILVDSEEINNSVDEFYVTTLLPQVSKF
MDPSKSPWKEWIEILDTNTSIPESELDEVRNAWNVWNEEFQNKILQRKKSVVHD
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggcggtattatggtctctacgacttccattaacaactccatggaaaaatggttgttct
tatgctaatctcaaactcttttcttctccatcatcgtcttcattctttcaccataaaact
agactcaacattcttctttctcactatttcattgcttcattatcgtcatcactttcaact
tctgcacaaactcaccttgcgattccagttcaggaattaatcacttcttctaaatgggaa
gcttttcggaaaaagaaagttgccatgcgtgttggctatgtcggttccaactacaaaggt
ttgcagaaacaacgggaggataatattcgcaccattgaagaagccttggaaatcgccctg
tataaagctggtggcatccgcgatagtaattttggtaacttaaacaaaattgcttgggca
agaagtagccgaactgataaaggagttcactcactggccaccacaatatcgttgaaaatg
gaaattcctgaatatgcatgggagaatgatccaaatggtgttgttcttgcgaatcatgtt
aatatgcatctccctgatgatattagagtgtttagtatattaccttctcaaaggagcttt
gatcctcgacgggaatgccatatccgaaattattcctacctccttccagctgaaattatt
ggagtaacaagtcactccactgatgctgaaattgattataatatacaggatttcaatgga
attcttaactgttttgagggagaacacccttttcataattacacagccaggtcaaattac
cgaagaaggcccactaaaggccgtgcaaatcgaagacacaaatcacctaataaactgcca
tccgtggaggttgaggaaaaccatactgattgtcaatcctcagtccacgaagaagatgca
ttgactgatgaagaatcggtcactaatctttctgatgcaagcgttgatgagctgctggat
tctgaagttgggcatgagtgcgagtcagggacgagaactcctactgaagttaggttcgct
agatggcttcatgagcgtgatgaagcagacagtctcagttctgctcattggaggaaaata
tttcagtgttcttgcagcaagttggagcaatctcatggaatggattttgtggagatctcg
atatgtggggagtctttcatgctacatcaaattcggaaaatggttggtaccgctattgca
gttaaacgtggcttgttaccgagagatatcctcaaattgtcacttaacaaattctcgaga
attattctccctcttgctccatcagaagttctactgttgagaggaaatgattttagactg
aggaagctacctggaaataagaaaaggccagaaatgcacattcttgttgattctgaagaa
attaataattcagttgatgagttctatgtaactacacttctacctcaggtttctaaattt
atggacccttctaaatctccttggaaagaatggattgagattttggataccaatacaagt
ataccagaatcggagttggatgaagtcagaaatgcttggaatgtttggaatgaagagttc
caaaacaagattcttcagagaaagaaaagtgtagtgcatgattga
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