Amaranthus tricolor (tampala): 130826938
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Entry
130826938 CDS
T09367
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri00040
Pentose and glucuronate interconversions
atri01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
130826938
Enzymes [BR:
atri01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
130826938
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
130826938
NCBI-ProteinID:
XP_057548553
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Position
11:complement(19749214..19752360)
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AA seq
403 aa
AA seq
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MLFFLYSFLVLAPTFILSIPVVHPDPEIVVHEVHRKINESIARRSLSYLSCGTGNPIDDC
WRCDPNWHENRQRLADCAIGFGKNAIGGKNGRIYVVTDSSDNDPVNPKPGTLRYAVVQDE
PLWIIFERDMVIKLKQELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCK
PGGYGMVRSNPHHYGLRRGSDGDGVSLFGASHVWVDHCSLSNCRDGLIDAIMGSTAITIS
NNYMTHHDKVMLLGHSDSYTDDKNMQATIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW
EMYAIGGSANPTINSQGNRFLAPDRRFSKEVTKHEDAPESEWKNWNWRSEGDLMLNGAYF
RASGAGASASYARASSLGARPSTLVSSITASAGSLNCKKSSRC
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgttattcttcttgtattctttcttagtcttagcccctacttttattctttcaataccc
gtggttcaccctgaccctgaaattgttgtacatgaagtacataggaaaatcaatgaatcc
attgctaggaggagcttgagctacctatcttgtggaacaggaaatcctattgatgattgc
tggagatgcgacccaaattggcatgaaaatcgccaacgactggccgattgtgcaattggg
tttggaaagaatgccattgggggcaaaaacgggcgtatttacgtggtcactgactcgagt
gataatgacccggttaatcctaaacccggaacccttagatatgctgtagttcaagatgaa
ccactatggatcatatttgaaagagacatggtcatcaaattaaaacaagaattgatcatg
aattcattcaagacaattgatggtagaggagcaagtgttcacattgctggtggaccatgc
ataaccatacaatatgtgactaacatcatcattcatggcatcaatatacatgattgtaag
ccaggtgggtatggtatggtgagaagcaatccacatcattatggattaagaaggggatcg
gacggtgatggtgtatcattatttggagctagtcatgtatgggtagatcattgttcatta
tcaaattgtagagatggtttgattgatgctatcatgggttcaacagccataactatttct
aacaattacatgactcatcatgataaggtcatgttattaggtcatagtgattcatatact
gatgataaaaatatgcaagctaccattgcttttaaccactttggtgaaggtcttgttcaa
aggatgccaagatgtagacatggatattttcatgtggtgaataatgactacacccattgg
gaaatgtatgccataggtgggagtgctaaccctactatcaatagtcaaggcaacagattt
ttggctcctgatagaagattcagcaaagaggtgactaaacatgaggatgccccggaaagt
gaatggaagaattggaattggaggtcagaaggagacctaatgctaaatggtgcatatttt
agggcatcgggtgcaggtgcttcagctagctatgcaagggcatctagcttgggtgctaga
ccatctacccttgtttcctctattactgcatctgctggttcacttaactgtaagaagtct
tctcgctgctga
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