KEGG   Amaranthus tricolor (tampala): 130827157
Entry
130827157         CDS       T09367                                 
Name
(RefSeq) sm-like protein LSM1B
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
atri  Amaranthus tricolor (tampala)
Pathway
atri03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:atri00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    130827157
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atri03019]
    130827157
Messenger RNA biogenesis [BR:atri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     130827157
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     130827157
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 130827157
NCBI-ProteinID: XP_057548787
LinkDB
Position
11:20212497..20217676
AA seq 128 aa
MSWSGPEDLYLSTSLASYLDRKILVLLRDGRKLLGTLCSFDQFANAVLEGSCERVIVGDL
YCDIPLGLYVIRGENVVLIGELDSEKEDLPPHMSRVSVSEIRKAQKAEREASDLKGLIRK
RMEFLDMD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcgtggagcggccctgaagatctctacctttcaacttctctcgccagctatcttgat
agaaaaattcttgttttattgcgtgatggaaggaaactcttggggacactttgttcattt
gatcaattcgcaaatgctgttctagaaggatcatgtgaaagagtcatcgtcggcgacctt
tattgtgacatccccttgggtttatatgtaatccgtggggagaacgtggtcctgattggt
gaactggattcagaaaaagaggatcttcccccccatatgtcacgtgtatcagtctctgaa
ataagaaaggcacagaaagccgagagggaagcctccgatcttaaaggactgatacgaaag
aggatggaattcctcgacatggactaa

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