Amaranthus tricolor (tampala): 130827157
Help
Entry
130827157 CDS
T09367
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130827157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130827157
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130827157
mRNA degradation factors
5'-3' decay
Lsm complex
130827157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
130827157
NCBI-ProteinID:
XP_057548787
LinkDB
All DBs
Position
11:20212497..20217676
Genome browser
AA seq
128 aa
AA seq
DB search
MSWSGPEDLYLSTSLASYLDRKILVLLRDGRKLLGTLCSFDQFANAVLEGSCERVIVGDL
YCDIPLGLYVIRGENVVLIGELDSEKEDLPPHMSRVSVSEIRKAQKAEREASDLKGLIRK
RMEFLDMD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtggagcggccctgaagatctctacctttcaacttctctcgccagctatcttgat
agaaaaattcttgttttattgcgtgatggaaggaaactcttggggacactttgttcattt
gatcaattcgcaaatgctgttctagaaggatcatgtgaaagagtcatcgtcggcgacctt
tattgtgacatccccttgggtttatatgtaatccgtggggagaacgtggtcctgattggt
gaactggattcagaaaaagaggatcttcccccccatatgtcacgtgtatcagtctctgaa
ataagaaaggcacagaaagccgagagggaagcctccgatcttaaaggactgatacgaaag
aggatggaattcctcgacatggactaa
DBGET
integrated database retrieval system