Amaranthus tricolor (tampala): 130827334
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Entry
130827334 CDS
T09367
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130827334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130827334
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
130827334
mRNA cycle factors
Common to processing body (P body) and stress granule
130827334
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
130827334
NCBI-ProteinID:
XP_057548999
LinkDB
All DBs
Position
1
Genome browser
AA seq
1038 aa
AA seq
DB search
MMAVHMDKPSEISPGERAQRLYKKNAELEKACRKSAHARIPLDPIVWQQMRENFEEMILV
DNVFSEKHDIELALWQLHHKKIEELRSLYNAALNGNSGHARPDRLASIRSQFKTFLSEAT
GFYHELMLKIRAKYGLPLDYFLDDPESQVFLSSNEQRFADIKKGLISCYRCLIYLGDLAR
YKGLYGDVDSKARDLAAASSYYMQASSLWPSGGNPHHQLAIVAAYHGDEFSATYRYFRSL
AVESPFVTARDNLIIAFERNRQSYSQLITDSRTSKVKAATSQMSWKGKGRGESRVLSKEN
RGRTTPSKEKTPSIQETLKSFCIKFVRVNGILFTRTSQETFTDVLAMSQSDFLMLLSSGL
EEQYSFGSNASECGLFIVRLVAILIFTLHNVNREPESQSYADILQRPVLLQSAYTAIFEF
MGHLVRRCLQLRDPFSSYLLPGILVFVEWLACHPDVVACSEAGENQVSARLLFWNSCITF
FNKLLSSGFMSKDEDDTCFFNTIKYEESETANLFALWEDFELRGFLPLHPAQQILDFSKK
HTYGNGKGSMEKEARIQRIIAAGKVFANVVRIGKQGIYYDTDMKKFVLCEEAPSYPASLT
KTPISNVISQEPLVEKITSPRVLEPVNAVEVEDEEEVIVFKPFAADKQYDYPILDSYEDL
GLVADAGDLGVFDLPISGSPNEDVQNGEHKNSPVAILRPSMSVADSAPHHPHPIQLDTSG
WLSEQQPSAMNGLKNLSLMDNGNLMNQNLSEPFARSLNEDLPNGKHQNSPGATLRPSMSV
ADYVSHRPQPVPLKTSGWLSEQQASVMNGFKNLSLMDNGNLMNQNSSEHFAPFQSSALSL
PFSHAVNLNNSNVYPVHVPETVLPSKTDLVISSGNDFAVSPIKAKSIFPPGVRKNPVSRP
IRHLGPPPGFTPATVEFGDAPVDDQNVRDENVIMDDYSWLDGYQMTSSKKQDRLFSVCNN
LSGASFNHFGKWSGAPGAMSFPFPGKQASLIQSPIENNKLWQEFQFPDLNHPQQVHKEEI
PLAEKFQGQSLWEGRYLV
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgatggctgttcatatggataaaccttctgagatttctcccggggagcgtgctcagcgt
ctttataaaaagaatgctgagctggaaaaagcctgtcgtaagtctgcacatgccagaatt
cctctagatcctattgtatggcaacagatgcgagagaactttgaagagatgatccttgta
gacaatgtattctcggagaaacatgatattgagcttgctttatggcaattgcatcacaag
aaaatagaagagctacgtagcttgtacaatgcagcgctaaacggaaatagtggtcatgct
cgtcctgatagacttgcttccattagatctcagtttaaaacttttctttcagaggcaaca
ggattctatcatgagcttatgttgaaaattagggcaaaatatggtctgcctcttgattat
tttttggatgatccagaaagtcaagtgtttctatccagcaacgaacaaagatttgctgat
attaagaagggcttgatctcttgttatcgttgcttgatttatcttggtgatcttgcacgt
tataagggtctctatggtgatgttgattccaaagctcgagatttagctgctgcttctagc
tattatatgcaagcatcttcattgtggccgtctggtggaaatccacatcatcagcttgct
atagtggctgcatatcacggtgatgaattttctgcaacgtatcgttattttcgtagtttg
gctgttgaaagcccatttgttacagctagggacaacttgatcattgcatttgagaggaac
cgtcagagctattcacaactgataacagattctagaacttcaaaagtcaaagctgcaact
tctcagatgtcctggaaaggaaaaggaagaggtgaatctagggtcttgtcgaaagaaaat
cgaggaagaacgactccaagtaaagagaagacgcccagtattcaagaaactttaaaatca
ttttgcataaagtttgttagagttaatggcatattgttcactcgcacaagccaggaaaca
tttacagatgtgctggcgatgtctcaaagtgattttctgatgcttctttcatctggtttg
gaagaacaatacagttttggatcaaatgcttctgaatgtggactttttattgttaggctt
gtggcaattctcatatttacattgcacaatgtgaatagagaacctgagagtcaatcgtat
gctgatatcttacagcgaccagttcttctccagagtgcgtatactgcaatctttgagttc
atgggacatttggttcggcgatgtttgcagttacgagatcccttttcaagttatctgttg
cccggtattttggtttttgtggaatggttagcctgtcatccagatgttgtggcatgcagt
gaagcaggggaaaaccaagttagtgctagattgctcttttggaattcctgtattaccttt
ttcaacaagctgttgtcaagtgggtttatgtctaaggatgaagatgatacttgctttttt
aacaccatcaagtatgaagagagtgaaactgcaaatctttttgctctctgggaggacttt
gagttgaggggttttctgcctcttcatcctgcacaacaaatcctggacttttctaagaag
catacttatgggaatgggaagggatccatggagaaagaagctcgcatacagcggattata
gctgctggaaaggtctttgcaaatgttgtgcggatcgggaaacaggggatatattatgat
actgacatgaagaaatttgtgctctgtgaggaggcaccatcttaccccgcttctttaacc
aaaacaccgatatcaaatgtgattagccaagaacctttagttgagaaaataacaagcccc
agagttctggaaccagtgaatgcggttgaggtagaggacgaggaagaggttattgtcttc
aagccttttgcagcagataagcaatatgattatccaattttggattcgtatgaagacctt
gggttggttgctgatgctggagacttgggagtttttgaccttcccatttcaggatcacca
aatgaagatgttcagaatggagaacataagaatagtcctgttgcaatattgagaccttcc
atgtctgttgcagattctgccccccaccatccgcatcctattcaactcgatacttctggt
tggttgtcagagcagcaaccttctgcgatgaatggattaaagaatttgagcttgatggat
aatgggaatttgatgaaccaaaatctttctgaaccttttgcacgatcactaaatgaagac
cttcctaatggtaaacatcagaacagtcctggtgcaacattaagaccttccatgtctgtt
gctgattatgtctcccaccgtccgcagcctgttccactcaaaacttctggttggttgtca
gagcagcaagcttctgtgatgaatggattcaaaaatttgagcttgatggacaatgggaat
ttgatgaaccaaaactcttctgaacattttgcacccttccaatcttctgccctttcattg
cctttctcgcatgctgtcaatctcaacaacagtaatgtgtatccggtgcatgttcctgaa
accgtcttgccatcaaagactgacttagttatatcttctgggaatgattttgccgtttct
cctatcaaggccaagtctatcttcccacccggtgttcgaaagaatccagtcagtcggcct
attcgacatttaggccctccaccaggttttacacccgctactgttgaattcggtgatgct
cctgtggatgatcaaaacgtaagggatgagaacgtaataatggatgattatagttggctg
gatggatatcagatgacgtcctcaaaaaaacaggataggttgttcagtgtctgcaacaat
ctaagcggagcttcatttaatcattttggcaagtggagtggcgcaccaggggcaatgagc
tttccttttcctggaaaacaggcttcactaattcaatccccaatcgagaacaacaaactc
tggcaggagtttcagtttcctgatctgaatcatccgcagcaggtccataaggaggaaata
ccacttgcagagaagtttcaaggtcaatctctgtgggaaggtcgttatctggtgtga
DBGET
integrated database retrieval system
