Amaranthus tricolor (tampala): 130827449
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Entry
130827449 CDS
T09367
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
atri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130827449
09123 Folding, sorting and degradation
03018 RNA degradation
130827449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130827449
03041 Spliceosome [BR:
atri03041
]
130827449
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130827449
mRNA degradation factors
5'-3' decay
Lsm complex
130827449
Spliceosome [BR:
atri03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
130827449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
130827449
NCBI-ProteinID:
XP_057549152
LinkDB
All DBs
Position
11:22991647..22995775
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AA seq
144 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPSVGRGRGRGREDGSGRQTKGIGRGMDDGG
KGVGGRGRGGPGGKPAGKAGGRGR
NT seq
435 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctgtcactattgaagactgcgcaaggccaccctatgttggtggaattgaag
aatggggagacttataatggacatttggttaattgtgatacctggatgaacattcatctc
cgtgaagttatttgtacctctaaggatggagacaggttctggaggatgcctgaatgttat
attagggggaatactatcaagtatcttcgagttccggatgaggtcattgataaagtccag
gaagagaagagtcgcacagataggaagcctcccagtgtagggcgtgggagaggaagaggt
agagaagatggctctgggcggcagaccaaaggcattggacgtggtatggatgatggcggt
aaaggtgttggaggtagaggtcgtggtggtcctggtgggaagcctgctgggaaagctgga
ggccgaggtcgatga
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