Amaranthus tricolor (tampala): 130827554
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Entry
130827554 CDS
T09367
Name
(RefSeq) BRCA1-associated RING domain protein 1-like isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
130827554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130827554
04121 Ubiquitin system [BR:
atri04121
]
130827554
03036 Chromosome and associated proteins [BR:
atri03036
]
130827554
03400 DNA repair and recombination proteins [BR:
atri03400
]
130827554
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
130827554
Ubiquitin system [BR:
atri04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
130827554
Chromosome and associated proteins [BR:
atri03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
130827554
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
130827554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-RING_6
zf-C3HC4
zf-HC5HC2H_2
zf-RING_UBOX
Prok-RING_4
zf-C3HC4_2
zf-RING_5
zf-C3HC4_3
zf-RING_2
RTT107_BRCT_5
PTCB-BRCT
PHD_NSD
zf-C3HC4_4
PHDvar_NSD
MDD_C
Motif
Other DBs
NCBI-GeneID:
130827554
NCBI-ProteinID:
XP_057549283
LinkDB
All DBs
Position
11:complement(23694495..23701819)
Genome browser
AA seq
642 aa
AA seq
DB search
MGESHNHAYFLNSWVLHLQKLGFTLTCSLCLKVYNEPMLLPCDHIFCSFCLPNSYLFGLQ
CPLCKFPYLEQGLRQAPFVENVVNIYKSLKPSFSMHMLNSDIEGGFVPCSFLTDAKYSNQ
IAKDLTKPPHGNSTSKTRGNTEQHETVNVDVNQIQLFPDSPSSRFSKGINGHDPGSSDIV
GKCLSNKLAKRTADDYGAYGYNSKKQKQLDQGLPEMNQGSTTSEAVNLENSVCAGSDMTN
TRNNTDNQQIFDFDSATLLNFKCAFCRTWKITEGSGPMQHFANGRQVFAHEASHSHVVHL
HHSCLDWAPQIFYVNDTTIKNLDKELARAGKLKCAQCGLKGAALGCYVKSCRKSYHAPCA
FEVKECRWDDDHFLMLCPDHASQKFPREKSKKPAPKKYSSAPGHNEQKNSRDLDFWATSH
SGAKNWVFCGSALSADEKYMLVKFANLCGATVTKSWNPNVTHVIATTDANGACSRTLKVL
MAILNGRWILKTDWIEACMQSKLPINEEPYEISLDNHGCCNGPKTGRLRLLNNEQKLFDN
LKFFFYGDFVSSFKRDLQNLVMTGGGTILKADELQPSSGKQCYQPSTSIIVYNDDSIEVN
EIVQRQVEAKKVALESGSQVIAYTWILDSIASGLLKPFVQKM
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgggggaatcccataaccatgcatatttcctcaattcatgggttcttcatcttcagaaa
ctagggtttactttaacatgttctctttgcctaaaggtgtacaatgagcctatgctgttg
ccgtgtgatcatattttctgcagtttttgcctacccaattcgtatttatttgggttacag
tgtcctctctgcaaatttccctatcttgaacaaggtttgagacaagctccttttgtggaa
aatgtggtcaacatctacaagagtttgaaaccttctttctctatgcacatgcttaattca
gatattgaaggaggttttgtgccatgctcatttctaacagatgcaaaatactctaatcaa
attgctaaggacctaactaaacctcctcatggcaactcaaccagtaaaacccgtggcaat
acagagcaacatgaaactgttaatgtggacgtgaaccagatacagttgtttccggacagt
ccatcttccagatttagcaagggtatcaacggtcatgatccaggaagcagtgatattgta
ggaaaatgtttatcaaataaacttgctaagcgaactgctgatgattacggagcttatggt
tataattccaagaagcaaaagcaactagaccaaggtttgccagagatgaaccagggaagt
acaacatcagaagctgtgaatctagagaattctgtttgtgcaggttctgacatgactaat
accaggaataatactgataaccagcaaatattcgatttcgattctgcaactttgcttaac
ttcaaatgtgcattttgccggacatggaagataacagagggtagtggacccatgcagcat
tttgctaatggtaggcaagtctttgcccacgaggctagtcattctcatgtcgtacacctg
caccatagctgcttagactgggcgcctcaaattttttatgtgaatgacactacgataaaa
aatttggataaagaactagcaagagcaggaaaactcaagtgcgctcaatgtgggctcaaa
ggagcagccctaggttgctatgtgaaatcctgtcgaaaaagttatcatgctccttgtgca
tttgaagttaaagaatgtagatgggatgacgatcattttctaatgctctgtcctgatcat
gcttcacaaaagttccctagagagaagtccaaaaagcctgctccaaaaaaatattcttca
gctccagggcataatgaacagaaaaattcacgcgatttagacttttgggcaacatctcat
tctggagcaaaaaattgggtattctgtggatcagccctttctgcagatgaaaagtatatg
ttggttaagtttgcgaacttgtgtggagccactgtgacaaagtcttggaacccaaatgtt
actcatgtgatcgccacaactgatgcaaatggtgcttgcagtcggacattgaaagttctt
atggctatacttaatgggagatggatacttaaaactgattggattgaagcatgcatgcaa
tcaaaacttcccataaatgaggaaccttacgaaattagccttgataatcacggatgttgt
aacggccctaaaactggcaggctcaggcttctgaataatgaacaaaagcttttcgacaac
cttaaattcttcttctatggtgacttcgtgtcgagtttcaaacgtgaccttcaaaatcta
gtaatgacaggaggaggtaccatccttaaagccgatgaactacaaccatctagtggcaaa
caatgttatcagccgtcaacttcaataatcgtttataatgatgattcaatagaagttaac
gagatcgtgcaacgacaggtagaggcaaagaaagtagctttagaaagtggttctcaagta
attgcttatacatggatcttggattcgatcgcttcaggtttattgaagcccttcgttcaa
aagatgtga
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