Amaranthus tricolor (tampala): 130827588
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Entry
130827588 CDS
T09367
Name
(RefSeq) oligouridylate-binding protein 1B-like
KO
K13201
nucleolysin TIA-1/TIAR
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130827588
03041 Spliceosome [BR:
atri03041
]
130827588
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
130827588
Spliceosome [BR:
atri03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
130827588
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_PARP14_3
RRM_7
RRM_5
RRM_DEAH11
Motif
Other DBs
NCBI-GeneID:
130827588
NCBI-ProteinID:
XP_057549328
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All DBs
Position
11:20286407..20295346
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AA seq
424 aa
AA seq
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MQNQRMKQQQQALMQQALLQQQSLYHPGLLAAPQIEPYPSGNLPPGFDPSTCRSVYVGNI
HPQVTEPLIQEVFASAGPVEGCKLIRKEKSSYGFIHYYDRRFASMAILTLNGRHLFGQPI
KVNWAYTSGQREDTSNHYNVFVGDLSPEVTDAMLFACFSVYPSCSDARVMWDQKTGRSRG
FGFVSFRSQQDAQSAINDLTGKWLGTRQIRCNWATKGATSNDDKQSSDAKSVVELTNGSS
EDGKEATNSEAPENNPQYTTVYVGNLAPETTQLDLHRHFHNLGAGSIEEVRVQRDKGFGF
VRYSTHAEAALGIQLGNTQSMLLGKQIKCSWGSKPTPAGTASNPLPPPAPAPLGFSATDL
LTYERQMAMSKMGGMHALMGGMHAQGPHPLNKASMGVTAAGASQAIYDGGFQNLAAAQQM
MYYQ
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaccaaagaatgaagcaacaacaacaagctttgatgcaacaagctcttcttcag
caacagtctctttaccatcccggtcttcttgctgctcctcagatagagccatatccaagt
ggaaaccttcctcctggttttgatccctctacatgtcgtagtgtgtatgtgggtaatatt
catcctcaagtcacagaaccattaattcaagaggtttttgctagtgccggcccagttgaa
ggttgcaagcttattaggaaagaaaagtcatcctatgggttcattcattactatgatcgc
agatttgccagcatggctatattgactctaaatggaaggcatttgtttggccagcctata
aaggtaaattgggcatatactagtggtcagagagaagacacttcaaatcattataatgtg
tttgttggcgacctgagccctgaggttacagatgctatgttgtttgcttgtttctctgtt
tatcctagttgttcagatgcaagagtaatgtgggatcaaaaaactggccgctctaggggg
tttggatttgtttctttccgcagccagcaggatgcccaaagtgctataaatgacctaaca
ggcaaatggctgggtactaggcagatacgctgcaattgggcaactaaaggagctactagc
aatgacgataagcagagttctgatgcaaaaagtgtggtggaattgacgaatggctcatca
gaagatggaaaggaggccacaaatagcgaagcccctgaaaataatcctcaatatacaact
gtgtacgtcgggaatcttgctcctgagactactcaacttgaccttcacagacactttcat
aacttaggtgctggatctattgaagaagtaagggtgcagcgtgacaaaggctttggcttt
gttagatacagtactcatgctgaagctgccttgggcattcagttgggaaatacacaaagt
atgcttttgggcaaacaaattaagtgttcgtggggaagcaagccaactccagcaggaaca
gcatcaaatccactgcccccaccagctcctgcgcccttaggtttttccgctacagatctt
ctcacctatgagaggcaaatggcaatgagtaagatgggcgggatgcatgctctgatgggc
gggatgcatgcacaagggcctcatcctctcaacaaagctagtatgggagtgacagccgct
ggtgctagccaagctatttatgatggcgggtttcaaaaccttgcagcagcccagcagatg
atgtactatcaataa
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