KEGG   Amaranthus tricolor (tampala): 130827719
Entry
130827719         CDS       T09367                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
atri  Amaranthus tricolor (tampala)
Pathway
atri03020  RNA polymerase
atri03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:atri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    130827719
  09124 Replication and repair
   03420 Nucleotide excision repair
    130827719
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:atri03021]
    130827719
   03400 DNA repair and recombination proteins [BR:atri03400]
    130827719
Transcription machinery [BR:atri03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     130827719
DNA repair and recombination proteins [BR:atri03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      130827719
SSDB
Motif
Pfam: RNA_pol_Rpb4 DUF5884
Other DBs
NCBI-GeneID: 130827719
NCBI-ProteinID: XP_057549537
LinkDB
Position
11:complement(25029737..25033844)
AA seq 138 aa
MSGEEEENAAELKLGEDFVKAKCLMNGEVSMILEHRLEQLQQVSEDPLNQMPQVFEKSLQ
YVKRFSRYKNPDAVRQVREILSRHQLAEFELAVLGNLCPETVEEAIAMVPSLKDKGRDLD
DEAIEKMLNDLALVKKFE
NT seq 417 nt   +upstreamnt  +downstreamnt
atgtcaggagaagaggaagagaacgcagcagagcttaaattgggtgaagatttcgtcaaa
gcaaaatgtttaatgaatggagaagtttccatgattttagagcacagattagagcaactt
caacaggtttctgaagatcctttaaatcagatgcctcaagttttcgaaaaatctttgcag
tacgtgaagcgattcagtcgttacaaaaatccagatgctgtgcgacaagttagagaaatt
cttagccgacatcaattagctgaatttgagcttgctgttcttgggaatctttgccctgaa
actgttgaagaagctattgctatggtcccttcccttaaggataaaggaagagatttagat
gatgaagctattgaaaagatgcttaatgatcttgctcttgttaagaagtttgaataa

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