Amaranthus tricolor (tampala): 130828062
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Entry
130828062 CDS
T09367
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130828062
03036 Chromosome and associated proteins [BR:
atri03036
]
130828062
Transcription machinery [BR:
atri03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
130828062
Chromosome and associated proteins [BR:
atri03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
130828062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HTH_44
HHH_3
Tex_central_region
HHH_9
SH2
S1
MRP-S34
Motif
Other DBs
NCBI-GeneID:
130828062
NCBI-ProteinID:
XP_057549849
LinkDB
All DBs
Position
1:43849829..43859952
Genome browser
AA seq
1653 aa
AA seq
DB search
MGGRAVVSDDEEELDLQDDEREQDEEGEELDDGEGGGGDDDDEDEDDEGQDEFENDGFIV
DGDEEEEEPEEEEEEDRDDDEERHRKKRKKKRESFELDDDDYELLLDNNVKVPRKETKKL
KRLKKARRDADVGHSGLSDEDEFDGAGRGGRTAEEQVKRSLFGDDDGGPVEDIPEDDEQV
EEEDPDLNDEDDMADFIVDEDEVDDDGMPIRRKPQKKKKHRQAPGVPSSALQEAHDIFGD
VEELLDMRRRLNLERDGYDDSGQWKDRGLEYEFEPIILAERYMTDKDDRMREIDVPERLQ
IFEESTGPPPTDAEFIEAETKWIKKQLESGQIPGLANVTFGEEVEDHIRNFLNFTHVQKL
DLPYIAMYRKEDIYSLLKDPETGEDVSHDKPALRRHKVLWVVYDSDRKWLLLQKRKSALH
GYYNKRFEEESRRVYDETRLGLNRQLFESIIEALRLAESEREVDDVDSKFNLHFPPGEAG
VDEGQYRRPKRKSLYSICNKAGLWEVGSKFGYSSEQFGRLISLETKMDEPEDPKETPEDV
ASNFTCAMFDSPQAVLKGARHMASVEISCEPRVKKHFRSIYFDNAVVSTCPTSDGNVVID
AFHQFSGVKWLRNKPLNKFEDAQWLLIQKAEEEKLLQVTIKMPEENLKKLLSDSEDQYVS
CGVSKLAQLWNEQRKLILQDAIFNFILPTLEKEARLWLTSRAKTWLLMDYGEHLWNKVSV
APYQRKESDMNSEDEAAPRVMACCWGPGKPPTTFVMLDSFGEVIDVLEAGSISLRSQNIS
DQHRKKHDQMNLLKFMTEHQPQVVVLGAVSLSCTRLKDDIYEIVFKMVEENPRDVGHEMD
GLSVFYGDESLPRLYENSRISSDQNPGHKGVVRRAVALGRYLQNPLAMVANLCGPGKEIL
SWKLSPLESFLNANEKCAMVEQIMVDVTNQVGIDLNLAANHDWLFAPLQFVSGLGPRKAA
SLQRSLARAGAIVTRKDLLTAHGLGRKVFISAAGFLRVRRSGLAVSTSQFVDVLDDTRIH
PESYALAQEMAKDIYTEIVGDDNFDDDDIEMAIEHLRDRPSALKSFSVDAYAKDTDRLSK
IETLHAIKMELIQGFQDWRKAYEEPNQDEEFYMISGETDATLSEGRVVQATVRRVQPQRA
MCALESGLTGMLAREDFSDDWRDCDLTEKLHEGDILTCKIKNIQKNRYQVFLTCKENDMR
NMGHQNIENRDPYYQEDSISLPSEQDKARKNKELAKKRFKPRMIVHPRFQNITADEAMEL
LADKEPGESVIRPSSRGPSYLTLTLKIYDGVFAHKDIIEGGKDHKDITSLLRIGKTLQLG
EDTFEDLDEVMDRYVDPLVTHLKAMLNYRKFRKGTKAEVDELLRIEKLDNPARIVYSFGI
SHEHPGTFILTYIRSSNPHHEYIGLYPKGFKFRKRMFDNIDRLVAYFQRHIDDPIHESPS
IRSVAAMVPMRSPATGGSSGGGGWGGSGGNDAGWRGSSDRDHLRAGRNDYRNGGRDGHPS
GAPRPYEGGGRGRGRGRGRGGRGSYDGTRDGGSRDGGDSSYGWKRGSDNRDSGHGSKRGS
DNNKEGSNSDYRSFPGAKVHNAPGEEAFPGGWSSSGAGGSSSGGGGGGESSIGGLRVSGG
DARKDSRRGSGSVSGSKSYSLGLSDSRGGGGGW
NT seq
4962 nt
NT seq
+upstream
nt +downstream
nt
atgggcggaagagcagtggtttcagacgatgaagaggagcttgatcttcaagatgacgag
agagagcaagatgaagaaggcgaggaacttgatgatggggaaggtggtggtggtgatgat
gacgatgaagacgaagatgatgaaggacaggatgagtttgagaatgatggtttcatcgtt
gatggtgatgaagaagaggaagaaccagaagaagaagaagaagaagatagggacgatgat
gaggagagacatagaaagaagagaaaaaagaaaagggaatcctttgaacttgatgatgat
gattatgagcttcttctggacaataatgttaaggttcctcgtaaagaaactaaaaagttg
aaaaggttaaagaaggctcggcgtgatgctgatgttgggcattctggtctctctgatgag
gatgaatttgatggagctgggagaggtggaaggacagcagaggagcaggtcaaacgctcc
ttatttggtgatgatgatggaggaccggttgaggatatccctgaagatgatgagcaggta
gaagaagaggatccagacttgaatgatgaagatgatatggctgattttattgttgacgaa
gatgaagttgatgatgatggaatgcctatcagaagaaaaccgcaaaagaaaaagaagcat
agacaagctcctggagttccatcatctgcactgcaggaggctcatgatatctttggagat
gtcgaagaacttctggatatgcgtcgtcgattgaatcttgaaagagatgggtatgatgat
agtggtcaatggaaggacagagggctggaatatgagtttgaacctatcattcttgcggag
aggtatatgactgacaaggatgatcgtatgcgggagatcgatgtacctgaaagattgcag
atattcgaggagagcacaggtcctcctcctactgatgctgaattcattgaagctgagacc
aagtggatcaaaaagcagctagaatctggtcaaattcctgggcttgcaaatgtaacattt
ggagaagaagtagaagatcatattagaaattttctgaacttcacacatgttcagaaactt
gatcttccttatattgctatgtaccgcaaggaggacatttacagtttgttgaaagacccc
gaaacaggtgaagatgtcagccatgataagcctgctttaagaaggcacaaggtgctttgg
gttgtctatgactcagatagaaaatggttgcttcttcaaaagcgaaagagtgctctccat
ggatattacaataaaagattcgaggaagagtcccgcagagtatatgatgaaacaagacta
ggtttaaatcgacagctttttgaatcaattattgaagccttgagacttgccgaatctgaa
agggaagtggatgatgttgactcaaaatttaatttgcatttccctcctggtgaggctggt
gtggatgaggggcagtatagaagaccgaagcgtaaatcactttatagcatttgcaacaaa
gctggtttatgggaggtaggcagcaaatttggctatagctctgagcagtttggcaggctg
atctctttggagacaaaaatggatgaacctgaagatccaaaggagacacctgaggatgtt
gcctcaaactttacatgtgcgatgtttgattcacctcaagctgttctaaaaggtgctaga
cacatggcatcagttgagataagttgcgagcctcgtgtgaaaaagcattttcgtagtata
tattttgacaatgcagtggtttcaacatgtcctacatctgatggaaatgtcgtcatagat
gctttccatcaattttctggtgtcaaatggttacgcaataagccattaaacaaatttgag
gatgcccaatggcttctcattcaaaaggctgaggaggagaagctcctccaggttactatt
aaaatgcctgaggagaatcttaagaagttgttaagtgattccgaggatcagtatgttagc
tgtggtgttagtaagctagcacagttgtggaatgagcagagaaaattgatattgcaggat
gcaatttttaattttatattgccaacactggagaaggaagctagactgtggttgactagc
agggctaagacctggttgctcatggactatggtgaacatctttggaataaagtttctgtg
gctccgtaccagcggaaggaaagtgatatgaactcagaggatgaggcagcaccaagggtc
atggcatgctgttggggtcctggaaagccaccaaccacttttgtcatgttggactcattt
ggtgaggttattgatgtcttagaggctgggtcaatcagcctgaggtctcaaaatatttct
gatcaacatcgtaaaaagcatgatcagatgaatcttttgaagttcatgactgagcatcag
ccacaggtcgtagtcctgggggctgtgagtttgtcttgtacccggcttaaggatgatatt
tatgagattgtctttaagatggttgaagaaaatcccagagatgtggggcacgagatggat
ggattgagtgttttctacggagacgaatctttacctcgtctctatgaaaattcgcgtatt
tcatctgatcagaatcctgggcataaaggtgttgtgagacgagctgttgcccttggacgc
tacctccagaatccattagctatggttgcaaatctttgtggaccaggcaaggaaattttg
tcgtggaaacttagtcctttagagagctttctcaatgccaatgaaaagtgtgcaatggtt
gaacagattatggttgatgtaactaaccaggtggggattgatctgaatttggcagcaaat
catgattggctatttgctcctttgcagtttgtttctggtcttgggcccaggaaagcagca
tctttacagcggtcacttgcaagagctggggcaatagtcacaagaaaagacttgttgact
gcacatggacttgggagaaaggtgttcataagtgctgctggttttctgcgtgttaggcgt
agtggtttagctgttagtaccagccagtttgttgacgtcttagatgatacaagaatacat
ccagagtcctatgccctggcacaagaaatggcaaaagatatttatacagaaattgtggga
gatgataattttgatgatgatgatattgagatggcaattgaacacctcagagaccgacca
agtgcattgaaatcatttagtgttgatgcatatgcaaaggatacagaccgtttgtctaag
atagagaccttgcatgcgattaaaatggaattgatacaaggatttcaagattggcgtaaa
gcatatgaagaacctaatcaagatgaagagttctatatgatttctggggagacagatgcc
acattgagtgaaggacgagttgttcaagctacagttcgcagggtgcaacctcaaagagca
atgtgtgccttggaatcaggattaactggtatgcttgcacgagaagatttttcagatgat
tggagagattgtgatttgactgagaagttgcatgaaggtgatatccttacctgtaagata
aaaaatatccagaaaaacagataccaggtgtttttgacatgtaaagagaatgacatgagg
aatatggggcatcagaatattgagaatcgagacccttactatcaagaagacagtatcagc
ttaccaagtgagcaagacaaggctcgcaaaaacaaggagcttgcgaagaagcgtttcaaa
cctaggatgattgttcatcctcgttttcagaatattactgctgatgaagcgatggagctt
ttggcagacaaagaacccggggaaagtgttattcgtccaagttctcgaggtccatcttat
ttgaccttgactctgaagatttatgatggtgtctttgctcacaaggacataattgaaggt
ggaaaggaccacaaagatataacaagtttgcttcggattgggaaaactttgcagcttggt
gaggatacttttgaggatttggatgaggttatggaccgctatgttgatcccttggttact
catttgaaggcaatgctgaactatcgcaagttccgaaagggtacaaaagcagaagttgat
gagctccttaggattgagaagttagataacccggctagaatagtttatagttttggaatt
tcacatgagcatcctggcacatttatccttacatatattcgtagttcaaatcctcatcac
gagtatatcggtttataccctaaaggcttcaaattccgcaagaggatgtttgataatatt
gataggcttgtagcgtatttccagaggcatattgacgatcccatacatgaatcaccgtct
attcgatcagttgctgctatggtgccaatgcgtagtccagcaactggtggttcctctggt
ggtggtggatggggtggctcaggaggcaatgatgctggctggcgaggatcttctgataga
gatcatttgagggcaggacgaaatgattacagaaatggtggtcgtgatgggcatcctagt
ggagcacctaggccatacgaaggaggaggccgtggtcggggtcgtggccgtggccgtggt
ggtcgaggctcatatgatggaaccagagatggcgggagcagggatggtggtgattccagc
tatggatggaagcggggctctgataatagagatagcgggcatggttccaagcgtggttca
gacaataataaagaaggaagcaatagtgattatagaagcttccctggtgctaaagtccat
aatgctccaggtgaggaagcttttcctggtggatggagttcaagtggggctggtggtagt
agtagtggaggcggaggtggaggcgaaagtagcattggaggcttgcgcgtatctggtggt
gatgcccgcaaagattctaggcggggttcaggttcagtttcaggttccaagagctactcc
ttgggactgtcggacagccggggtggaggaggtgggtggtag
DBGET
integrated database retrieval system
