Amaranthus tricolor (tampala): 130828368
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Entry
130828368 CDS
T09367
Name
(RefSeq) uncharacterized protein LOC130828368 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130828368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130828368
03019 Messenger RNA biogenesis [BR:
atri03019
]
130828368
Transcription machinery [BR:
atri03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130828368
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
130828368
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
130828368
NCBI-ProteinID:
XP_057550313
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All DBs
Position
12:6233540..6240757
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AA seq
542 aa
AA seq
DB search
MLPFLQQFTNQNNASACPGGSQAVGVANNMSPNLRPIQPQMGFVNPQLSIPFDNNNPNYN
PNLGNMNMPNFNALPNSHMSNSIVGSAQQIQSQSLGQNLNVLGFPMNGQLSNLGQLGNGQ
FGWQNQLPNVNQLGNMPLLNPSQINALTQLLGCANQVAQAINPQNTPFFGNSQLGFGQPN
GGLHLGNFAQQLPVVPMQLPNVSGPPSNVVGSSYQHSQQMQSNHAQRQGMHNFKSSPHQN
KKFVKNQKREASNHRPQRSQDHQIHNSKAGNKDAGAANSDIQSKGGKRRSLAALYTEKEI
QQWREERKKNYPSNSNVKKKLAQKQANAENADQDAKLRRQQLKDVLAKQVELGFEIPEIP
SHYLVDQDHQDNRKDRSRKPINKGRFQKKGFQNRYNRAGKHDRKDQFSSKREAEEGGSFR
KRDRYAKRHKSDNENLSETCLSLREPTLLKKLLSNDMKRDKTHLLQALRFMVMNSFFKDW
PEKPLNFPKVIVEETGVESNVIEEMSSSFKGELNDDDDCDDDSSIEGDGKNDVPQEEGEI
TD
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctttccttcagcaattcactaaccagaataatgcttctgcatgtcctggtggt
tcacaggctgttggagttgctaacaatatgtcgcccaatttaagaccaattcaaccacaa
atgggttttgtaaatcctcaattatcgatcccgtttgataacaataatcctaattataat
cccaatttaggtaatatgaacatgcccaatttcaatgctttgccaaatagtcatatgagt
aactccattgtgggttctgctcaacagattcaatctcaaagtcttgggcagaatttgaat
gttttggggtttccaatgaatgggcaattaagcaatttgggtcaattgggtaatgggcaa
tttggatggcagaatcagttacccaatgtgaaccaactagggaatatgcctttattgaat
ccttctcaaattaatgctttgactcagttgttgggttgtgctaatcaagttgctcaggca
attaatccgcaaaatacacccttttttgggaattcacagcttggttttggccaacctaat
ggtggtttgcatctgggtaattttgctcaacagttgcctgttgtgccgatgcagttgccg
aatgtatcgggtccaccttccaatgttgttggttcatcttatcagcatagtcagcagatg
cagagtaatcatgctcaacgacaagggatgcataattttaagtcaagcccccatcaaaat
aagaagttcgtgaagaaccagaaaagagaagcatctaaccacaggccgcaaaggtctcaa
gatcatcaaatacataattcaaaagcaggcaataaagatgctggtgctgctaattctgac
atccaatctaagggtggaaagcgaaggtcacttgctgcactctacactgagaaagaaatt
cagcagtggcgtgaagaacgcaagaaaaattatccatctaactccaatgtgaaaaagaag
ctggcacagaagcaagcaaatgctgagaatgctgatcaagatgccaagttacggcgtcaa
caactaaaggatgtattggcaaagcaagtggagttgggctttgaaattcctgaaattcca
tcgcactatcttgttgatcaagatcatcaggataacaggaaggatcgatctaggaaacct
attaacaaaggacgctttcaaaaaaagggattccagaacaggtataatcgagcagggaag
catgacagaaaagaccagttttcttcaaaaagggaagcagaagaaggtggttcattcagg
aaacgtgatcgatatgcaaaaagacacaagtcggataatgagaatttgtccgaaacttgt
ttaagtttgagggagccgacccttctgaaaaagcttctaagcaacgatatgaaaagagat
aagacccatctactacaagctcttcgtttcatggtcatgaactcgttcttcaaggattgg
cccgagaaacctcttaatttcccgaaggttattgtcgaggaaactggagttgagagcaat
gtaattgaagagatgtcgtcctcttttaagggcgaactcaacgatgatgatgactgcgat
gatgattcttctattgaaggtgacggtaaaaacgatgtgcctcaagaagagggagaaatc
acagactag
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