Amaranthus tricolor (tampala): 130828403
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Entry
130828403 CDS
T09367
Name
(RefSeq) DNA polymerase delta catalytic subunit isoform X1
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03030
DNA replication
atri03410
Base excision repair
atri03420
Nucleotide excision repair
atri03430
Mismatch repair
atri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130828403
03410 Base excision repair
130828403
03420 Nucleotide excision repair
130828403
03430 Mismatch repair
130828403
03440 Homologous recombination
130828403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atri03032
]
130828403
03400 DNA repair and recombination proteins [BR:
atri03400
]
130828403
Enzymes [BR:
atri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
130828403
DNA replication proteins [BR:
atri03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
130828403
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
130828403
MMR (mismatch excision repair)
DNA polymerase delta complex
130828403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
divDNApol
Motif
Other DBs
NCBI-GeneID:
130828403
NCBI-ProteinID:
XP_057550361
LinkDB
All DBs
Position
12:6634654..6657629
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AA seq
1086 aa
AA seq
DB search
MNGGNSRKRQAPTPHPSPAQPPKYHASTIEDEEFDEDVFLEDHLIDEDAQILRDIDERQA
LASRLSKWARPPLSQSYISQSQSIVFQQLEIDYVIGESHKEILSNRSGPAAIIRIFGVTR
EGHSVCCNVHGFEPYFYISCPSGMGPDDISCFHQNLEGRMSEANKNTKVPQFVRRIEMVQ
KRSIMYYQQQSSHPFLKIVVALPSMVATCRGILDRGIQIDGLGTKSFMTYESNVLYALRF
MIDCNIVGGNWIEVPVEKYRRTSKNLSSCQLEFDCLYTDLTSHAPEGEFSKMAPFRILSF
DIECAGRKGLFPEPNHDPVIQVANLVTVQGENEPFVRNVMTLKSCSSIVGVDVMSFDSER
ELLLAWRDLIREVDPDIIIGYNICNFDLPYLVQRANALGIAEFPILGRIRSSRVRVKDTT
FSSRQYGTRESKEVAIEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLGEQKEDVHHSIIT
DLQNGNSETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKV
LSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMA
YNLCYCTLVTPEDIRNLNLPPESLNKTPSGETFVKPELQKGILPEILEELIAARKRAKAD
LKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIELTKK
LVEDKFTVSGGYEHTAEIIYGDTDSVMVQFGVSTVEEAMKLGREAAEYISGAFIKPIKLE
FEKVYYPYLLISKKRYAGLFWTNPEKYDKMDTKGIETVRRDNCLLVKNLVNECLHKILID
RDVQGAVQYVKNTISDLLMNRLDLSLLVITKGLTKTGDNYEVKAAHVELAERMRKRDAAT
APGVGDRVPYVIVKAAKGAKAYEKSEDPIFVLENNIPIDPQYYLENQITKPILRIFEPIL
KNASKELLHGSHTRSISISTPSNSGIMKFAKKQLTCIGCKALISGSNKTLCSHCKGREAE
LYCKTVASVSELESLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQ
LDRWNF
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcggaaactcaagaaagcgtcaagctcctactccacatccatcaccagcacaa
ccacctaaatatcatgcttctacaattgaagatgaagaatttgacgaagatgttttctta
gaagatcacctcattgacgaagacgctcaaattcttcgtgacattgatgaacgccaagct
ttagcttctcgtctctccaaatgggctcgtcctcctctttctcaatcgtacatttcacaa
tctcagagtatagtttttcagcaattggagattgattatgtgattggtgaaagccataag
gagattttgagtaatcggagtggtcctgctgcaattattcggattttcggtgttactcgt
gaagggcacagtgtttgctgcaatgttcatggatttgaaccctacttctacataagctgc
ccatcagggatgggtccagatgatatatcctgttttcatcaaaacctggaggggagaatg
agtgaggctaataagaacaccaaggttccccagtttgttcgacgtatcgagatggtacaa
aaaaggagcataatgtattatcaacaacaaagttctcatccttttctgaaaattgtggtt
gcgttgccgtcgatggtcgcaacttgtcgagggattctagatcgaggcatacaaattgat
ggcctggggaccaaaagtttcatgacatatgagagcaacgtcctctatgctcttcgtttc
atgattgattgcaacattgttggtgggaactggattgaggttcctgttgaaaaatataga
agaacaagcaagaatctgtcctcttgccagctggaatttgattgcttatatacggacttg
acaagccatgctcctgaaggtgaattttcgaagatggctccatttcgcattttaagtttt
gacattgagtgtgctgggcgcaaaggtctatttcccgagcccaatcatgatcctgttatt
caggtggcgaatctagtaacagtacaaggtgaaaatgagccatttgttcgaaatgttatg
acccttaaatcatgttcttccattgttggagttgatgtcatgtcctttgacagtgagaga
gaacttttgcttgcttggagggatttaattcgcgaagtagatcctgacataattatagga
tacaacatctgcaactttgatctaccatatcttgtccagagagcaaatgcacttggaatt
gcggagtttcctattcttggtcgcataaggagcagcagggtccgtgtcaaagatacaaca
ttttcttcaaggcagtatggaacaagggaaagtaaagaagttgcaattgaggggagagta
caatttgatttgcttcaggtcatgcaaagagactataaactaagctcatattctctaaat
tctgtatcagcacatttccttggcgagcagaaagaggatgtccatcattcaattataaca
gatctgcaaaatgggaattcagaaactaggaggcgtcttgctgtttactgtttgaaggat
gcataccttcctcagcggttgctggataagttgatgttcatttacaattatgttgaaatg
gccagagtgacaggagtccctatatcatttctcctctccagggggcaaagtattaaggtt
ctttctcaacttctaaggaaggcaaaacagaagaatcttgtaataccaaacgtcaaacag
gcaggatccgagcaaggaacatatgaaggggcaactgtcttagaggccagagcaggattt
tatgagaagccaattgcaacactagattttgcttcattgtatccatctatcatgatggct
tataatttgtgctattgtacactggtaacacctgaggacatccgcaatcttaatctaccc
ccagaaagtcttaacaagactccttctggtgaaacctttgtcaagcctgagctccagaaa
ggaatacttccagaaattcttgaagagctcatagctgctcgcaaaagggccaaagcagat
ttaaaggaagctaaagatcctttggagaaggctgtccttgatggtcgtcagctagctttg
aagataagtgcaaattctgtttatgggtttacaggagccactgttggccagttaccatgt
ttagagatttcttcaagtgtcacaagctatggtcgccagatgattgaacttactaagaag
ctcgttgaagataaatttactgtttctggtggctatgaacatactgctgagattatttac
ggggacacagattctgttatggtgcaatttggtgtatctactgttgaagaagcaatgaaa
ctgggaagggaagcagctgaatacataagtggagctttcattaagcccatcaaactagag
tttgagaaggtttattatccatatttgctgattagcaaaaagagatatgcgggcttattc
tggacaaaccctgaaaagtatgacaaaatggatacaaaaggcattgaaacagttaggagg
gacaattgcctattagtcaaaaacttggtcaatgaatgtcttcataagatacttattgat
agagatgtccaaggagctgtccagtatgtcaagaatactatttcagatcttttaatgaat
cgtctagacctgtcattattggtcattacaaaggggctgacaaaaacgggagacaattat
gaagtgaaagcagctcacgttgaacttgctgaacgtatgcgcaagcgagatgctgccacc
gctcctggtgttggtgatagagtaccttatgtcattgttaaagctgccaaaggtgccaag
gcatatgaaaaatcagaggatcccatctttgtgctcgaaaataatataccaatagaccca
caatattaccttgaaaatcaaattaccaaacccattttgagaatctttgaaccaatattg
aaaaatgcaagcaaagagttgctccatggaagtcacactagatccatttccatctctact
ccttcaaacagtgggatcatgaaatttgccaaaaaacaactcacttgcattggctgtaaa
gcgttgatcagtggttccaacaaaaccctttgctctcattgcaagggaagagaggctgaa
ctctattgcaagacggtggctagtgtttctgaattagagtctcttttcggacggctctgg
acacaatgccaagaatgtcagggttcccttcaccaggatgttctttgtacaagccgtgac
tgcccaatattttatcggagaaagaaagcacaaaaggacatggcagaagccaagcttcag
ttagatagatggaatttctga
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